GGGenome | Results

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2025-04-09 00:09:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Gossypium herbaceum isolate GPA1alz chromosome 10.
CP106701.1:1056496-1056521

ATCTATCCATTTTTTTCTTCAAGCTATTTT1056496CCCCTGTTTACGAGGCTATCTATTCTACTCTCGTGTCTTAACCATTTCATTTCATG

Gossypium rotundifolium isolate GPK201 chromosome 5.
CP106726.1:86858954-86858979

ATCCATCCATCTTTTTCTTCAAGCTATTTT86858954CCCCTGTTTACGAGGCTATCTATTCTACTCTTCTGTCTATCCCATTTCATTTCATG

Gossypium rotundifolium isolate GPK201 chromosome 8.
CP106729.1:120356776-120356801

ATCCATCCATCTTTTTCTTCAAGCTATTTT120356776CCCCTGTTTACGAGGCTATCTATTCTACTTTTCTATCTAAACCATTTCATTTCATG

Gossypium hirsutum chromosome 10 SNP marker NG0204310 associated with blue disease resistance genomic sequence.
GU265862.1:411-436

ATCCATCCATTTTTTTCTTCAAGCTATTTT411CCCCTGTTTACGAGGCTATCTATTCTACTCTTGTGTCTTAACCATTTCATTTCATG

Gossypium herbaceum isolate Zhongcao1 chromosome 10.
CP106689.1:118736187-118736212

CATGAAATGAAATGGTTAAGACACGAGAGT118736187AGAATAGATAGCCTCGTAAACAGGGGAAAATAGCTTGAAGAAAAAAATGGATGGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.110 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=CCCCTGTTTACGAGGCTATCTATTCT&k=0&no_gap=0&offset=0&limit=50
0.140 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=AGAATAGATAGCCTCGTAAACAGGGG&k=0&no_gap=0&offset=0&limit=46
0.140 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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