GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 07:27:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Onychomys arenicola genome assembly, chromosome: 6.
OX460352.1:16330244-16330263
CCCCTCCCTCCCCACCCCTTTTTCTTCTCT16330244CCCCTTCCCTTTGTCTCTTCCTGGGCTTCTGGTAATCTACTTATACATGG
Onychomys leucogaster genome assembly, chromosome: 6.
OX460376.1:18345751-18345770
CCCCTCCCTCCCCATCCCTTTTTCTTCTCT18345751CCCCTTCCCTTTGTCTCTTCCTGGGCTTCTGGTAATCTACTTCTACATGG
Onychomys leucogaster genome assembly, chromosome: 6.
OX460423.1:18714122-18714141
CCCCTCCCTCCCCATCCCTTTTTCTTCTCT18714122CCCCTTCCCTTTGTCTCTTCCTGGGCTTCTGGTAATCTACTTCTACATGG
Onychomys arenicola genome assembly, chromosome: 6.
OX460447.1:19376260-19376279
CCCCTCCCTCCCCACCCCTTTTTCTTCTCT19376260CCCCTTCCCTTTGTCTCTTCCTGGGCTTCTGGTAATCTACTTCTACATGG
Lutra lutra genome assembly, chromosome: 18.
LR738420.1:21428754-21428773
CCTCTCGGCATCGACTTTCGATAATTCCAT21428754CCCCTTCCCTTTGTCTCTTCGTTCCTGCGTTAATAGTTAGCTCCTGTCAC
Microcaecilia unicolor genome assembly, chromosome: 2.
LR594633.1:396610537-396610556
GCCTCTCAGCCAGTTCCCTTACACTCTGTC396610537CCCCTTCCCTTTGTCTCTTCTCCCCCTCCATATTGCACTTTCATCCCTCT
CHO_OF236xn17r1.ab1 CHO_OF Nicotiana tabacum genomic 3', genomic survey sequence.
ET869852.1:90-109
GTGTAGTATGATGTCCACTCCCTGCCCCAT90CCCCTTCCCTTTGTCTCTTCTATATCTTTTTTTTTTTTCTAACAAGAAAA
Aegilops umbellulata cultivar TA1851 chromosome 5U.
CP136058.1:603811690-603811709
ACAAAAGGGGGCTGACTACCTTTAGGGCGC603811690CCCCTTCCCTTTGTCTCTTCCGTGGAGAAAGGCAGGAGGAGGCTAGCCTC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38575348-38575367
TTCTTTTTCTTTCCGTCTCCTTCCTTTCTT38575348CCCCTTCCCTTTGTCTCTTCTTTGATCCCATATCAGCTTCTTTTTTCTTC
Geranium rotundifolium genome assembly, chromosome: 10.
OY987320.1:30080413-30080432
CTCTCTTGGGGGCACCACGTCACCACCAAG30080413CCCCTTCCCTTTGTCTCTTCTATGAACTCAGCCGACAATTCTCCACTCTT
Dryas octopetala genome assembly, chromosome: 9.
OY992840.1:19488280-19488299
TCGCTCTTTCGCACCACCTCCTTTCTCTCT19488280CCCCTTCCCTTTGTCTCTTCTCTGTCTTTCTCTCACCTATCTTCTCTCCT
Platycnemis pennipes genome assembly, chromosome: 10.
OW121856.1:79410834-79410853
CAACTCGACCCCTTAGGGGGTGGACAAACA79410834CCCCTTCCCTTTGTCTCTTCAGTCTGTAAACAAGGCACTAAGACCGAATC
Orthosia gothica genome assembly, chromosome: 18.
OX459052.1:4812426-4812445
TTTTATTTTATTTGTACCGCTGCAGTATGA4812426CCCCTTCCCTTTGTCTCTTCCATTGCTCTCTCGCACATTCGCAACAGTTC
Caprimulgus europaeus genome assembly, chromosome: 24.
OU015548.1:979437-979456
AAACAAGAAAGGGGTTCTTGTGAAAGATGA979437GAAGAGACAAAGGGAAGGGGGACAGAAGGCAGGAAGCAGAAAAGGAGAGA
Solea senegalensis genome assembly, chromosome: L.
OW185643.1:21969977-21969996
CTTCAACAGGAGAGATGAATAGGTGCTCGT21969977GAAGAGACAAAGGGAAGGGGTTGGTGAGAGACGGAGCGGAAGCGGGACTC
Solea solea genome assembly, chromosome: 6.
OY282539.1:21686323-21686342
CTTCAACAGGAGAGATGAATAGGTGCTCGT21686323GAAGAGACAAAGGGAAGGGGTTGGTGAGAGACAGAGCGGAAGCGGGACTT
Latimeria chalumnae DNA, Fosmid clone: CFIC-033N22, sequence: CFIC-033N22.b.
GA629659.1:336-355
AAGGGGGAACTAGAAGGAACAAGGGGATCA336GAAGAGACAAAGGGAAGGGGAAACCAGAAGGAATAAGGGGATCAGAAGAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2490954-2490973
GAAGAAAAAAGAAGCTGATATGGGATCAAA2490954GAAGAGACAAAGGGAAGGGGAAGAAAGGAAGGAGACGGAAAGAAAAAGAA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2508302-2508321
GAAGAAAAAAGAAGCTGATACGGGATCAAA2508302GAAGAGACAAAGGGAAGGGGAAGAAAGGAAGGAGACGGAAAGAAAAAGAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2537694-2537713
GAAGAAAAAAGAAGCTGATACGGGATCAAA2537694GAAGAGACAAAGGGAAGGGGAAGAAAGGAAGGAGACGGAAAGAAAAAGAA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2627630-2627649
GAAGAAAAAAGAAGCTGATACGGGATCAAA2627630GAAGAGACAAAGGGAAGGGGAAGAAAGGAAGGAGACGGAAAGAAAAAGAA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2710653-2710672
GAAGAAAAAAGAAGCTGATACGGGATCAAA2710653GAAGAGACAAAGGGAAGGGGAAGAAAGGAAGGAGACGGAAAGAAAAAGAA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2750605-2750624
GAAGAAAAAAGAAGCTGATACGGGATCAAA2750605GAAGAGACAAAGGGAAGGGGAAGAAAGGAAGGAGACGGAAAGAAAAAGAA
Viscum album genome assembly, chromosome: B1.
OY728167.1:248939415-248939434
GGATTCGAAGGAGGATCACCCATGGAGGGA248939415GAAGAGACAAAGGGAAGGGGGTTTGAGACCCCTTCATGTTCCAAAATCAA
Euphorbia lathyris genome assembly, chromosome: 1.
OY755220.1:106069176-106069195
GATCAGTGTAGCAGAGAGAGTGTAGGTTTT106069176GAAGAGACAAAGGGAAGGGGGAGAGTCGAACTAGAAGTGAAAACTGAAAA
Geranium rotundifolium genome assembly, chromosome: 10.
OY987320.1:30078759-30078778
AAGAGCGGGGAATTGTCGGCCGAGTTCATA30078759GAAGAGACAAAGGGAAGGGGCTTGGTGGTGACGTGGTGCCCCCAAGAGAG
Drosophila histrio genome assembly, chromosome: X.
OY282582.1:21929879-21929898
TCAGAATTGTGAGATGGAGAGAAAGGATAA21929879GAAGAGACAAAGGGAAGGGGATAAGAGAGTTTGAGTTATGACAGATTAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCCTTCCCTTTGTCTCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCCTTCCCTTTGTCTCTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.142 | 0.133 | search_plus_done; http://172.18.8.135:50400/match?q=CCCCTTCCCTTTGTCTCTTC&k=0&no_gap=0&offset=0&limit=50
0.219 | 0.076 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGAGACAAAGGGAAGGGG&k=0&no_gap=0&offset=0&limit=37
0.228 | 0.010 | cgi_end;

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