GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:49:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES08K01, 5' end sequence.
FY385360.1:516-535
TAAATGATAGGACGTCGATGAAGATGGGAA516GTGAAGATCTGAGCAAGGGGTTCATCAACAATAATATGTGGTTGAATGAC
Dianthus caryophyllus mRNA, clone: CFES02M03, 5' end sequence.
FY394834.1:525-544
TAAATGATAGGACGTCGATGAAGATGGGAA525GTGAAGATCTGAGCAAGGGGTTCATCAACAATAATATGTGGTTGAATGAC
TSA: Dianthus caryophyllus mRNA, contig: CAK09.647.C1.
FX297863.1:537-556
TAAATGATAGGACGTCGATGAAGATGGGAA537GTGAAGATCTGAGCAAGGGGTTCATCAACAATAATATGTGGTTGAATGAC
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:37777196-37777215
CGACGTTGACGGAGACGATGGCAGTTGCGG37777196GTGAAGATCTGAGCAAGGGGTCATCTTTCTGCGATGAGGGGAATTCTGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCCTTGCTCAGATCTTCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCCTTGCTCAGATCTTCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.155 | 0.146 | search_plus_done; http://172.18.8.135:50400/match?q=CCCCTTGCTCAGATCTTCAC&k=0&no_gap=0&offset=0&limit=50
0.445 | 0.290 | search_minus_done; http://172.18.8.135:50400/match?q=GTGAAGATCTGAGCAAGGGG&k=0&no_gap=0&offset=0&limit=50
0.448 | 0.003 | cgi_end;

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