GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 06:01:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST578787 potato roots Solanum tuberosum cDNA clone cPRO20H24 5' end, mRNA sequence.
BM404460.1:54-73
TGACATTGTCTATGATTGCAGCCGGCTCTT54CCCTGAACCTCCTTATCCCCGAGAGATAACACAGATGGAATCTGATCATA
66666.1 After-Cooking Darkening A Solanum tuberosum cDNA clone 66666 5', mRNA sequence.
CV286393.1:97-116
TGACATTGTCTATGATTGCAGCCGGCTCTT97CCCTGAACCTCCTTATCCCCGAGAGATAACACAGATGGAATCTGATCATA
CNML7199.b1_M24.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNML7199, mRNA sequence.
EH720793.1:526-545
TGGTATTGTGTATGACTGTGGGCGACTCTT526CCCTGAACCTCCTTATCCCCGAGAGGTGATAGCAATGGAACCTGATCAAA
TSA: Saussurea involucrata Unigene12271_SAUriwTARAAPEI-1, mRNA sequence.
JW903526.1:805-824
TGATATTGTGTATGACTGTGGACGACTCTT805CCCTGAACCTCCTTATCCCCGAGAGGTGATCGCAATGGAACCTGATGAAA
Solanum tuberosum GSS, clone GP21.
AJ487347.1:635-654
CGACATTGTCTATGATTGCAGCCGGCTCTT635CCCTGAACCTCCTTATCCCCGAGAGGTAAAATTTTGTGTGCACCATTAAA
Solanum tuberosum cultivar P8 chromosome 5.
CP046690.1:4038362-4038381
YGACATTGTCTATGATTGCAGCCGGCTCTT4038362CCCTGAACCTCCTTATCCCCGAGAGGTAAAATTTTGTGTGCACCATTAAA
Solanum tuberosum cultivar MSH/14-112 chromosome 5.
CP046698.1:4038372-4038391
YGACATTGTCTATGATTGCAGCCGGCTCTT4038372CCCTGAACCTCCTTATCCCCGAGAGGTAAAATTTTGTGTGCACCATTAAA
Solanum pinnatisectum cultivar CGN17745 chromosome 5.
CP047565.1:4036873-4036892
TGACATTGTCTATGATTGCAGCCGGCTCTT4036873CCCTGAACCTCCTTATCCCCGAGAGGTAAAATTTTGTGTGCACCATTAAA
Solanum tuberosum cultivar Solyntus chromosome 5.
CP055238.1:4264191-4264210
TGACATTGTCTATGATTGCAGCCGGCTCTT4264191CCCTGAACCTCCTTATCCCCGAGAGGTAAAATTTTGTGTGCACCATTAAA
Solanum verrucosum cultivar 11H23 chromosome 5.
CP133616.1:3556088-3556107
TGACATTGTCTATGATTGCAGCCGGCTCTT3556088CCCTGAACCTCCTTATCCCCGAGAGGTAAAATTTTGTGTGCACCATTAAA
Chrysanthemum makinoi genome assembly, chromosome: 5.
OU343221.1:284696367-284696386
TGGTCTTGTTTATGAATGTGGACGCCTCTT284696367CCCTGAACCTCCTTATCCCCGAGAGGTAACAAAGTTACAAGCTTAACGAG
Chrysanthemum makinoi genome assembly, chromosome: 5.
OU343221.1:320526036-320526055
TGGTCTTGTTTATGAATGTGGACGCCTCTT320526036CCCTGAACCTCCTTATCCCCGAGAGGTAACAAAGTTACAAGCTTAATGAG
Arctium minus genome assembly, chromosome: 4.
OX941083.1:117111192-117111211
TGATATTGTGTATGACTGTGGACGACTCTT117111192CCCTGAACCTCCTTATCCCCGAGAGGTAAGAAAAGTACAAAATTATGAAC
Fringilla coelebs genome assembly, chromosome: 3.
OY740726.1:38767353-38767372
GCAGCTGAGGGAACTGCAGTTGTTTACCCT38767353GGGGATAAGGAGGTTCAGGGAAGTCCTCATCACTCTCTACAACTGCCAAA
TSA: Nicotiana benthamiana isotig05767.Nb_root mRNA sequence.
KA752472.1:1177-1196
GTACGATCCGGTTCCATCTGCGTTATCTTC1177GGGGATAAGGAGGTTCAGGGAAGAGCCGACTGCAACTGTAGACAATGTCA
Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH097J10, complete sequence.
AC238182.1:782-801
TTTAATGGTGCACACAAAATTTTACCTCTC782GGGGATAAGGAGGTTCAGGGAAGAGCCGGCTGCAATCATAGACAATGTCA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 11.
CP124709.1:1866438-1866457
TTTGATCGTGCACACTAAATTTTACCTCTC1866438GGGGATAAGGAGGTTCAGGGAAGAGCCGGTTGCAATCATAGACAATGCCG
Chrysanthemum makinoi genome assembly, chromosome: 2.
OU343218.1:162393005-162393024
CTCATTAAGCTTGTAATTTTGTTACCTCTC162393005GGGGATAAGGAGGTTCAGGGAAGAGGCGTCCACATTCATAAACAAGACCA
Chrysanthemum makinoi genome assembly, chromosome: 5.
OU343221.1:284667792-284667811
CTCATTAAGCTTGTAACTTTGTTACCTCTC284667792GGGGATAAGGAGGTTCAGGGAAGAGGCGTCCACATTCATAAACAAGACCA
Solanum dulcamara genome assembly, chromosome: 2.
OX359253.1:875396-875415
TTTAATAGTGCAAGCCAAATTTTACCTCGC875396GGGGATAAGGAGGTTCAGGGAAGAGCCGGTTGCAATCATAGACAATGTCG
Arctium minus genome assembly, chromosome: 2.
OX941081.1:76427346-76427365
GTTCATAGTTTTATACTTTTCTTACCTCTC76427346GGGGATAAGGAGGTTCAGGGAAGAGTCGTCCACAGTCATACACAATATCA
Arctium minus genome assembly, chromosome: 6.
OX941085.1:7846951-7846970
GTTCATAATTTTGTACTTTTCTTACCTCTC7846951GGGGATAAGGAGGTTCAGGGAAGAGTCGTCCACAGTCATACACAATATCA
Pseudognaphalium luteoalbum genome assembly, chromosome: 4.
OY730195.1:11709556-11709575
TCCATTAAGCTCGTAACTGTATTACCTCTC11709556GGGGATAAGGAGGTTCAGGGAAGAGCCGTCCACAGTCGTAAACAATACCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCTGAACCTCCTTATCCCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCTGAACCTCCTTATCCCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.222 | 0.213 | search_plus_done; http://172.18.8.135:50400/match?q=CCCTGAACCTCCTTATCCCC&k=0&no_gap=0&offset=0&limit=50
0.283 | 0.061 | search_minus_done; http://172.18.8.135:50400/match?q=GGGGATAAGGAGGTTCAGGG&k=0&no_gap=0&offset=0&limit=37
0.290 | 0.007 | cgi_end;

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