GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 12:12:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Vitis vinifera contig VV78X084038.8, whole genome shotgun sequence.
AM434210.2:7109-7128
TTCAGTTTTTTCCTGAAGCAACACCCAAAA7109CCCTTCATCAACAGGCACATCACAGAACGCCAAAACAAACCCTAAAACCG
Microcos paniculata chromosome 2b.
CP131448.1:3889839-3889858
GATGATCTTTAGAAGCATAGAGAGAAACTA3889839CCCTTCATCAACAGGCACATTCATCAACCACATGTAAGAAAGTAAATTAA
Microcos paniculata chromosome 3b.
CP131449.1:40840895-40840914
CATGATCTTTAGAAGCATAGAGAGAAACTA40840895CCCTTCATCAACAGGCACATTCATCAACCACTTGTAAGAAAGCAAATCAA
Microcos paniculata chromosome 2a.
CP131457.1:3616803-3616822
GATGATCTTTAGAAGCATAGAGAGAAACTA3616803CCCTTCATCAACAGGCACATTCATCAACCACATGTAAGAAAGTAAATTAA
Microcos paniculata chromosome 3a.
CP131458.1:43081761-43081780
CATGATCTTTAGAAGCATAGAGAGAAACTA43081761CCCTTCATCAACAGGCACATTCATCAACCACTTGTAAGAAAGCAAATCAA
Vitis vinifera cv. PN40024, annotated scaffold_128.assembly12x.
FN596501.1:512139-512158
TTCAGTTTTTTCCTGAAGCAACACCCAAAA512139CCCTTCATCAACAGGCACATCACAGAACCCCAAAACAAACCCTAAAACCG
Sequence 95822 from Patent EP2761003.
JC710041.1:491-510
CGGTTTTAGGGTTTGTTTTGGGGTTCTGTG491ATGTGCCTGTTGATGAAGGGTTTTGGGTGTTGCTTCAGGAAAAAACTGAA
Quercus petraea EST, clone WZ0AQPAA6YG05FM1.
FN766861.1:139-158
CCAAGCAATATCCCATGTGGAGTTTTATGA139ATGTGCCTGTTGATGAAGGGATATTCCTCTCAATGCTTCTAAAGACTATG
Prunus dulcis DNA, pseudomolecule Pd02.
AP019298.1:11673737-11673756
AGCCCTATACCAACTTCAGGAGCATTATGA11673737ATGTGCCTGTTGATGAAGGGCTGCTGATCTCCATGCTTCTGAAGATCATG
Prunus dulcis DNA, pseudomolecule Pd02.
AP019298.1:11676383-11676402
TTGATCTAATTAATTGCAGGAGCATTATGA11676383ATGTGCCTGTTGATGAAGGGCTGTTGCTCTCCATGCTTCTGAAGCTCATG
Vitis rotundifolia cultivar Noble chromosome 14.
CP092939.1:2516528-2516547
AGGTTTTAGGGTTTGTTTTAGGGTTCTGTG2516528ATGTGCCTGTTGATGAAGGGTTTTGGGTGTTGCTTCAGGAAAAAACTGAA
Quercus dentata isolate Qdleaves-2020 chromosome 3.
CP116446.1:49985028-49985047
TTGTACTCAAATGTGGCAGGAGTTTTATGA49985028ATGTGCCTGTTGATGAAGGGATATTCCTCTCAATGCTTCTAAAGACTATG
Vitis vinifera cultivar Pinot Noir 40024 chromosome 14.
CP126661.1:3099458-3099477
CGGTTTTAGGGTTTGTTTTGGGGTTCTGTG3099458ATGTGCCTGTTGATGAAGGGTTTTGGGTGTTGCTTCAGGAAAAAACTGAA
Vitis x doaniana cultivar PI 588149 chromosome 14.
CP128322.1:3177389-3177408
CGGTTTTAGGGTTTGTTTTGGGGTTCTGTG3177389ATGTGCCTGTTGATGAAGGGTTTTGGGTGTTGCTTCAGGAAAAAACTGAA
Vitis x doaniana cultivar PI 588149 chromosome 14.
CP128341.1:2816931-2816950
CGGTTTTAGGGTTTGTTTTGGGGTTCTGTG2816931ATGTGCCTGTTGATGAAGGGTTTTGGGTGTTGCTTCAGGAAAAAACTGAA
Quercus variabilis isolate HB chromosome 3b.
CP129435.1:48938771-48938790
TTGTACTCAAATGTGGCAGGAGTTTTATGA48938771ATGTGCCTGTTGATGAAGGGATATTCCTCTCAATGCTTCTAAAGATTATG
Quercus variabilis isolate HB chromosome 3a.
CP129447.1:51268990-51269009
TTGTACTCAAATGTGGCAGGAGTTTTATGA51268990ATGTGCCTGTTGATGAAGGGATATTCCTCTCAATGCTTCTAAAGATTATG
Microcos paniculata chromosome 2a.
CP131457.1:45765623-45765642
TTGATTTGCTTTCTTACAGGTGGTTGATGA45765623ATGTGCCTGTTGATGAAGGGTAGTTTCTCTTTATGCTTCTAAAGATCATG
Microcos paniculata chromosome 4a.
CP131459.1:32610683-32610702
TTGATTTGCTTTCTTACAGGTGGTTGATGA32610683ATGTGCCTGTTGATGAAGGGTAGTTTCTCTCTATGCTTAAAGATCATGAC
Quercus robur genome assembly, chromosome: 3.
OW028767.1:47375824-47375843
TTGTACTCAAATGTGGCAGGAGTTTTATGA47375824ATGTGCCTGTTGATGAAGGGATATTCCTCTCAATGCTTCTAAAGACTATG
Quercus cerris genome assembly, chromosome: 5.
OY770010.1:45357334-45357353
TTGTACTCAAATGTGGCAGGAGTTTTATGA45357334ATGTGCCTGTTGATGAAGGGATATTCCTCTCAATGCTTCTAAAGATTATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCTTCATCAACAGGCACAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCTTCATCAACAGGCACAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.167 | 0.159 | search_plus_done; http://172.18.8.135:50400/match?q=CCCTTCATCAACAGGCACAT&k=0&no_gap=0&offset=0&limit=50
0.537 | 0.369 | search_minus_done; http://172.18.8.135:50400/match?q=ATGTGCCTGTTGATGAAGGG&k=0&no_gap=0&offset=0&limit=44
0.546 | 0.010 | cgi_end;

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