GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 13:08:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:37684441-37684460
TAACACTAGGATCCCATAACTGTATATGTC37684441CCCTTGTCTTGATGGTTCGCCACTAATTGCATACTCTGTAACTCATGAAA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:27103525-27103544
TAACACTAGGATCCCATAACTGTATATGTC27103525CCCTTGTCTTGATGGTTCGCCACTAATTGCATACTCTGTAACTCATGAAA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:25317535-25317554
TAACACTAGGATCCCATAACTGTATATGTC25317535CCCTTGTCTTGATGGTTCGCCACCAATTGCGTACTCTGTAACTCATGAAA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:26943440-26943459
TAACACTAGGATCCCATAACTGTATATGTC26943440CCCTTGTCTTGATGGTTCGCCACTAATTGCATACTCTGTAACTCATGAAA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:26800086-26800105
TAACACTAGGATCCCATAACTGTATATGTC26800086CCCTTGTCTTGATGGTTCGCCACCAATTTCGTACCCTGTAACTCATGAAA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:25363851-25363870
TAACACTAGGATCCCATAACTGTATATGTC25363851CCCTTGTCTTGATGGTTCGCCACTAATTGCATACTCTGTAACTCATGAAA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:23381162-23381181
TAACACTAGGATCCCATAACTGTATATGTC23381162CCCTTGTCTTGATGGTTCGCCACCAATTGCGTACTCTGTAACTCATGAAA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:23450675-23450694
TAACACTAGGATCCCATAACTGTATATGTC23450675CCCTTGTCTTGATGGTTCGCCACCAATTTCGTACCCTGTAACTCATGAAA
Malus domestica genome assembly, chromosome: 1.
OU696677.1:23372703-23372722
TAACACTAGGATCCCATAACTGTATATGTC23372703CCCTTGTCTTGATGGTTCGCCACCAATTGCGTACTCTGTAACTCATGAAA
Malus domestica genome assembly, chromosome: 1.
OU744542.1:27167080-27167099
TAACACTAGGATCCCATAACTGTATATGTC27167080CCCTTGTCTTGATGGTTCGCCACTAATTGCATACTCTGTAACTCATGAAA
Malus domestica genome assembly, chromosome: 1.
OU744953.1:26465299-26465318
TAACACTAGGATCCCATAACTGTATATGTC26465299CCCTTGTCTTGATGGTTCGCCACTAATTCCATACTCTGTAACTCATGAAA
Malus domestica genome assembly, chromosome: 1.
OU744953.1:26532946-26532965
TAACACTAGGATCCCATAACTGTATATGTC26532946CCCTTGTCTTGATGGTTCGCCACCAATTTCGTACCCTGTAACTCATGAAA
Malus domestica genome assembly, chromosome: 1.
OU744991.1:23726663-23726682
TAACACTAGGATCCCATAACTGTATATGTC23726663CCCTTGTCTTGATGGTTCGCCACCAATTTCGTACCCTGTAACTCATGAAA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:6815410-6815429
TTTCATGAGTTACAGGGTACGAAATTGGTG6815410GCGAACCATCAAGACAAGGGGACATATACAGTTATGGGATCCTAGTGTTA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:6891540-6891559
TTTCATGAGTTACAGAGTATGGAATTAGTG6891540GCGAACCATCAAGACAAGGGGACATATACAGTTATGGGATCCTAGTGTTA
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:5447277-5447296
TTTCATGAGTTACAGAGTACGCAATTGGTG5447277GCGAACCATCAAGACAAGGGGACATATACAGTTATGGGATCCTAGTGTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCTTGTCTTGATGGTTCGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCTTGTCTTGATGGTTCGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.292 | 0.283 | search_plus_done; http://172.18.8.135:50400/match?q=CCCTTGTCTTGATGGTTCGC&k=0&no_gap=0&offset=0&limit=50
0.371 | 0.079 | search_minus_done; http://172.18.8.135:50400/match?q=GCGAACCATCAAGACAAGGG&k=0&no_gap=0&offset=0&limit=37
0.373 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).