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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 07:37:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 118414 from Patent WO2008034648.
FB899141.1:2095-2115
TGGTGCCATATTCCTCGATCGTGGTTGACC2095CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGTCA
Sequence 122964 from Patent WO2008034648.
FB903691.1:2095-2115
TGGTGCCATATTCCTCGATCGTGGTTGACC2095CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGTCA
Sequence 131353 from Patent WO2008034648.
FB912080.1:2095-2115
TGGTGCCATATTCCTCGATCGTGGTTGACC2095CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGTCA
Sequence 143429 from Patent WO2008034648.
FB924156.1:2095-2115
TGGTGCCATATTCCTCGATCGTGGTTGACC2095CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGTCA
Sequence 118414 from Patent EP2090662.
HB769200.1:2095-2115
TGGTGCCATATTCCTCGATCGTGGTTGACC2095CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGTCA
Sequence 122964 from Patent EP2090662.
HB773750.1:2095-2115
TGGTGCCATATTCCTCGATCGTGGTTGACC2095CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGTCA
Sequence 131353 from Patent EP2090662.
HB782139.1:2095-2115
TGGTGCCATATTCCTCGATCGTGGTTGACC2095CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGTCA
Sequence 143429 from Patent EP2090662.
HB794215.1:2095-2115
TGGTGCCATATTCCTCGATCGTGGTTGACC2095CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGTCA
Mdfw2007m09.y1 Mdfw Malus domestica cDNA clone Mdfw2007m09 5' similar to SW:BGAL_MALDO P48981 BETA-GALACTOSIDASE PRECURSOR, mRNA sequence.
CN493622.1:198-218
TGGTACCATATTCCTCGATCGTGGTTGACC198CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Mdfr3026g04.y1 Mdfr Malus domestica cDNA clone Mdfr3026g04 5' similar to SW:BGAL_MALDO P48981 BETA-GALACTOSIDASE PRECURSOR, mRNA sequence.
CO753557.1:187-207
TGGTACCATATTCCTCGATCGTGGTTGACC187CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Mdst6021m01.y1 Mdst Malus domestica cDNA clone Mdst6021m01 5' similar to SW:BGAL_MALDO P48981 BETA-GALACTOSIDASE PRECURSOR, mRNA sequence.
CV793955.1:464-484
TGGTACCATATTCCTCGATCGTGGTTGACC464CCGACTGGAAATCTACTGGTGGTGTTCGAAAAATGGGGTGGTGATCCGCAA
011029ABEA006077HT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus domestica cDNA clone ABEA006077, mRNA sequence.
EB150003.1:505-525
TGGTACCATATTCCTCGATCGTGGTTGACC505CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
030628ABOC001379HT (ABOC) Crab apple mature fruit Malus sieboldii cDNA clone ABOCC00137, mRNA sequence.
EE663867.1:464-484
TGGTACCATATTCCTCGATCGTGGTTGACC464CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Mdrtb1024E22.g1 Apple_EST_Mdrtb Malus domestica cDNA 5' similar to sp|P48981|BGAL_MALDO Beta-galactosidase precursor (Lactase) (Acid beta-galactosidase) (Exo-(1--4)-beta-D-galactanase) pir|T17002 prob
GO516329.1:477-497
TGGTACCATATTCCTCGATCGTGGTTGACC477CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Md-95 Granny Smith apple skin coloration supression substractive hybridization cDNA library Malus domestica cDNA, mRNA sequence.
JK750406.1:27-47
ACCATATTCCTCGATCGTGGTTGACC27CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
TSA: Pyrus communis mRNA, contig: lc12070.
FX620652.1:127-147
TGGTACCATATTCCTCGATCGTGGTTGACC127CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGTCA
Pyrus communis PcGAL2 mRNA for pear beta-galactosidase2, complete cds.
AB086424.1:2310-2330
TGGTGCCATATTCCTCGATCGTGGTTGACC2310CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGTCA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:5323764-5323784
AGGTACCATATTCCTCGATCGTGGTTGACC5323764CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:5725404-5725424
AGGTACCATATTCCTCGATCGTGGTTGACC5725404CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:5586379-5586399
AGGTACCATATTCCTCGATCGTGGTTGACC5586379CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:5713593-5713613
AGGTACCATATTCCTCGATCGTGGTTGACC5713593CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Malus x domestica cultivar Royal Gala beta-galactosidase 101 (BGAL101) mRNA, complete cds.
KC107807.1:2124-2144
TGGTACCATATTCCTCGATCGTGGTTGACC2124CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:5794573-5794593
AGGTACCATATTCCTCGATCGTGGTTGACC5794573CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Malus domestica genome assembly, chromosome: 2.
OU696678.1:5575686-5575706
AGGTACCATATTCCTCGATCGTGGTTGACC5575686CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Malus domestica genome assembly, chromosome: 2.
OU744543.1:6097879-6097899
AGGTACCATATTCCTCGATCGTGGTTGACC6097879CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Malus domestica genome assembly, chromosome: 2.
OU744954.1:5680293-5680313
AGGTACCATATTCCTCGATCGTGGTTGACC5680293CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Malus domestica genome assembly, chromosome: 2.
OU744992.1:5575625-5575645
AGGTACCATATTCCTCGATCGTGGTTGACC5575625CCGACTGGAAATCTACTGGTGGTGTTCGAAGAATGGGGTGGTGATCCGCAA
Mdlr7005O09.g1 Apple_EST_Mdlr Malus domestica cDNA similar to sp|P48981|BGAL_MALDO Beta-galactosidase precursor (Lactase) (Acid beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) pir|T17002 probable
DR990656.1:386-406
TTGCGGATCACCACCCCATTCTTCGAACAC386CACCAGTAGATTTCCAGTCGGGGTCAACCACGATCGAGGAATATGGTACCA
fl_08F06_BH11 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254943.1:192-212
TTGCGGATCACCACCCCATTCTTCGAACAC192CACCAGTAGATTTCCAGTCGGGGTCAACCACGATCGAGGAATATGGT
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:30129618-30129638
TTGCGGATCACCACCCCATTCTTCGAACAC30129618CACCAGTAGATTTCCAGTCGGGGTCAACCACGATCGAGGTATATGGTACCT
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:32641800-32641820
TTGCGGATCACCACCCCATTCTTCGAACAC32641800CACCAGTAGATTTCCAGTCGGGGTCAACCACGATCGAGGAATATGGTACCT
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:31356583-31356603
TTGCGGATCACCACCCCATTCTTCGAACAC31356583CACCAGTAGATTTCCAGTCGGGGTCAACCACGATCGAGGAATATGGTACCT
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:35080618-35080638
TGACGGATCACCACCCCATTCTTCGAACAC35080618CACCAGTAGATTTCCAGTCGGTGTCAACCACGATCGAGGAATATGGTACCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGACTGGAAATCTACTGGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGACTGGAAATCTACTGGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.747 | 0.738 | search_plus_done; http://172.18.8.135:50400/match?q=CCGACTGGAAATCTACTGGTG&k=0&no_gap=0&offset=0&limit=50
1.008 | 0.261 | search_minus_done; http://172.18.8.135:50400/match?q=CACCAGTAGATTTCCAGTCGG&k=0&no_gap=0&offset=0&limit=23
1.012 | 0.004 | cgi_end;

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