GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:53:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig56, mRNA sequence.
JW050300.1:1381-1400
GTTGCTCTCGTTCTTGTTCTTGACTACGAC1381CCGCCATTGATTTCACTGTAAAGACTTGATTTTTAGGATTGATTGGTGTT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 3.
CP124717.1:69423360-69423379
GTTGCTCTCGTTCTTGTTCTTGACTATGAC69423360CCGCCATTGATTTCACTGTAAAGATTTGATTTTTAGGCCTAATTGGTGTT
Acholoe squamosa genome assembly, chromosome: 14.
OX439048.1:66150265-66150284
TTTTGTGCTTCATGGATTCTTTATAATTTT66150265CCGCCATTGATTTCACTGTACTTGTTGCATGTGATTGTTATCTAATATAT
JH02014F10 JH-201 Capsicum annuum cDNA 5', mRNA sequence.
CO776559.1:67-86
AACACCAATCAATCCTAAAAATCAAGTCTT67TACAGTGAAATCAATGGCGGGTCGTAGTCAAGAACAAGAACGAGAGCAAC
KS25004D11 KS25 Capsicum annuum cDNA, mRNA sequence.
GD124181.1:248-267
AACACCAATCAATCCTAAAAATCAAGTCTT248TACAGTGAAATCAATGGCGGGTCGTAGTCAAGAACAAGAACGAGAGCAAC
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:156611438-156611457
AACACCAATCAATCCTAAAAATCAAGTCTT156611438TACAGTGAAATCAATGGCGGGTCGTAGTCAAGAACAAGAACGAGAGCAAC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 2.
CP124730.1:157447870-157447889
AACACCAATCAATCCTAAAAATCAAGTCTT157447870TACAGTGAAATCAATGGCGGGTCGTAGTCAAGAACAAGAACGAGAGCAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCGCCATTGATTTCACTGTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGCCATTGATTTCACTGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=CCGCCATTGATTTCACTGTA&k=0&no_gap=0&offset=0&limit=50
0.243 | 0.126 | search_minus_done; http://172.18.8.135:50400/match?q=TACAGTGAAATCAATGGCGG&k=0&no_gap=0&offset=0&limit=47
0.246 | 0.003 | cgi_end;

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