GGGenome | Results

2025-04-08 18:10:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

SS2127.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS2127.txt 5', mRNA sequence.
CV546065.1:168-187

AGTGACGTCACGGTTGCCTCTGCGACGAAA168CCGCCTCAATCTCTAGCTTTAGTGGTTCACACTCCTTCCGTTGTTGGAGG

BR044420 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-063F08 5', mRNA sequence.
EX059776.1:94-113

AGCGACGTCACGGTTGCCTCTGCGACGAAA94CCGCCTCAATCTCTAGCTTTAGTGGTTCACACTCCTTCCGTTGTTGGAGG

BR078590 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-102H11 5', mRNA sequence.
EX092300.1:177-196

AGCGACGTCACGGTTGCCTCTGCGACGAAA177CCGCCTCAATCTCTAGCTTTAGTGGTTCACACTCCTTCCGTTGTTGGAGG

Pyrrhosoma nymphula genome assembly, chromosome: 5.
OY754331.1:116343283-116343302

TCATTCATTACCTCTGATGGCATGGACTGT116343283CCGCCTCAATCTCTAGCTTTGGCTCCAGCTATATCAGATGCTCAGTATAA

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_10848.
FX701962.1:1090-1109

CCTCCAACAACGGAAGGAGTGTGAACCACT1090AAAGCTAGAGATTGAGGCGGTTTCGTCGCAGAGGCAACCGTGACGTCGCT

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8819.
FX736720.1:998-1017

CCTCCAACAACGGAAGGAGTGTGAACCACT998AAAGCTAGAGATTGAGGCGGTTTCGTCGCAGAGGCAACCGTGACGTCGCT

Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:9674700-9674719

CCTCCAACAACGGAAGGAGTGTGAACCACT9674700AAAGCTAGAGATTGAGGCGGTTTCGTCGCAGAGGCAACCGTGACGTCGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.314 | 0.305 | search_plus_done; http://172.18.8.135:50400/match?q=CCGCCTCAATCTCTAGCTTT&k=0&no_gap=0&offset=0&limit=50
0.351 | 0.038 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGCTAGAGATTGAGGCGG&k=0&no_gap=0&offset=0&limit=46
0.354 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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