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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 20:34:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrB020O15R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB020O15, genomic survey sequence.
DX025807.1:485-506
TGTGCCCCCACCAAACAAATCAGAAACAAA485CCGGAACAAGTGGACCGGAAATCCATGATTAAATAGTTGGTCTAGTTACTTG
KBrB075B12F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB075B12, genomic survey sequence.
DX066867.1:481-502
TGTGCCCCCACCAAACAAATCAGAAACAAA481CCGGAACAAGTGGACCGGAAATCCATGATTAAATAGTTGGTCTAGTTACTTG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69317974-69317995
TGTGCCCCCACCAAACAAATCAGAAACAAA69317974CCGGAACAAGTGGACCGGAAATCCATGATTAAATAGTTGGTCTAGTTACTTG
Brassica oleracea var. italica Pp523 downy mildew resistance gene-linked marker OPJ19_550 genomic sequence.
DQ459310.1:107-128
TGTGCCCCCACCAAACAAATCAGAAACAAA107CCGGAACAAGTGGACCGGAAATCCATGGTTAATTAGTTGGTCTAGTTACATG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53244267-53244288
TGTGCCCCCACCAAGCAAATCAGAAACAAA53244267CCGGAACAAGTGGACCGGAAATCCATGGTTAATTAGTTGGTCTAGTTACATG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41416005-41416026
TGTGCCCCCACCAAGCAAATCAGAAACAAA41416005CCGGAACAAGTGGACCGGAAATCCATGGTTAATTAGTTGGTCTAGTTACATG
Brassica rapa genome, scaffold: A09.
LR031568.1:57405142-57405163
TGTGCCCCCACCAAACAAATCAGAAACAAA57405142CCGGAACAAGTGGACCGGAAATCCATGATTAAATAGTTGGTCTAGTTACTTG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50665461-50665482
TGTGCCCCCACCAAACAAATCAGAAACAAA50665461CCGGAACAAGTGGACCGGAAATCCATGGTTAATTAGTTGGTCTAGTTACATG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a011O10_T7.
AM390354.1:415-436
CATGTAACTAGACCAACTAATTAACCATGG415ATTTCCGGTCCACTTGTTCCGGTTTGTTTCTGATTTGTTTGGTGGGGGCACA
Brassica oleracea var. viridis mRNA, clone: KALE-033P19, 5' end sequence.
DK468538.1:313-334
CATGTAACTAGACCAACTAATTAACCATGG313ATTTCCGGTCCACTTGTTCCGGTTTGTTTCTGATTTGTTTGGTGGGGGCACA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046G18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189365.2:49480-49501
CAAGTAACTAGACCAACTATTTAATCATGG49480ATTTCCGGTCCACTTGTTCCGGTTTGTTTCTGATTTGTTTGGTGGGGGCACA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:260457-260478
CATGTAACTAGACCAACTAATTAACCATGG260457ATTTCCGGTCCACTTGTTCCGGTTTGTTTCTGATTTGCTTGGTGGGGGCACA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:36847678-36847699
CAAGTAACTAGACCAACTATTTAATCATGG36847678ATTTCCGGTCCACTTGTTCCGGTTTGTTTCTGATTTGTTTGGTGGGGGCACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGGAACAAGTGGACCGGAAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGGAACAAGTGGACCGGAAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.261 | 0.252 | search_plus_done; http://172.18.8.135:50400/match?q=CCGGAACAAGTGGACCGGAAAT&k=0&no_gap=0&offset=0&limit=50
0.383 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTCCGGTCCACTTGTTCCGG&k=0&no_gap=0&offset=0&limit=42
0.386 | 0.003 | cgi_end;

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