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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_8137.
FX658598.1:1150-1169
CGCCACCGGAGACTCTGCCGCCGTTAGTCG1150CCGGAATATTTGTCGGTTTGTTTCTCATCATTTTTGCTGCTGTCTCTTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1683.
FX738705.1:1154-1173
CGCCACCGGAGACTCTGCCGCCGTTAGTCG1154CCGGAATATTTGTCGGTTTGTTTCTCATCATTTTTGCTGCTGTCTCTTTC
TSA: Raphanus sativus RS07578 mRNA sequence.
JT792125.1:1124-1143
CGCCACCGGAGACTCTGCCGCCGTTAGTCG1124CCGGAATATTTGTCGGTTTGTTTCTCATCATTTTTGCTGCTGTCTCTTTC
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:28128488-28128507
CGCCACCGGAGACTCTGCCGCCGTTAGTCG28128488CCGGAATATTTGTCGGTTTGTTTCTCATCATTTTTGCTGCTGTCTCTTTC
Harpalus rubripes genome assembly, chromosome: 10.
OY720457.1:47606438-47606457
CTACATTCAGACGGACGCTCAATAATAAGC47606438CCGGAATATTTGTCGGTTTGCCAGGACTTGAGTTATTCGCCCCAATTCTG
RR3BI64TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV552528.1:427-446
GAAAGAGACAGCAGCAAAAATGATGAGAAA427CAAACCGACAAATATTCCGGCGACTAACGGCGGCAGAGTCTCCGGTGGCG
RR4BG41TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV570167.1:29-48
GAGAGACAGCAGCAAAAATGATGAGAAA29CAAACCGACAAATATTCCGGCGACTAACGGCGGCAGAGTCTCCGGTGGCG
RS3G092TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD954744.1:425-444
GAAAGAGACAGCAGCAAAAATGACGAGAAA425CAAACCGACAAATATTCCGGCGACTAACGGCGGCAGAGTCTCCGGTGGCG
Raphanus sativus mRNA, clone: RSCS02P10, 5' end sequence.
FY446871.1:394-413
GAAAGAGACAGCAGCAAAAATGATGAGAAA394CAAACCGACAAATATTCCGGCGACTAACGGCGGCAGAGTCTCCGGTGGCG
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:7393794-7393813
GAAAGAGACAGCAGCAAAAATGATGAGAAA7393794CAAACCGACAAATATTCCGGCGACTAACGGCGGCAGAGTCTCCGGTGGCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGGAATATTTGTCGGTTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGGAATATTTGTCGGTTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.209 | 0.200 | search_plus_done; http://172.18.8.135:50400/match?q=CCGGAATATTTGTCGGTTTG&k=0&no_gap=0&offset=0&limit=50
0.606 | 0.398 | search_minus_done; http://172.18.8.135:50400/match?q=CAAACCGACAAATATTCCGG&k=0&no_gap=0&offset=0&limit=45
0.610 | 0.004 | cgi_end;

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