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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 19:53:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

USDA-FP_00453 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00453 5', mRNA sequence.
BQ623362.1:218-237
AGTACTGGCTGTTCCCACCCTGGTTGTGAG218CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCS01_01aa10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence.
CB290208.1:644-663
AGTACTGGCTGTTCCCACCCTGGTTGTGAG644CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCS01_04cd07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cd07, mRNA sequence.
CB292489.1:674-693
AGTACTGGCTGTTCCCACCCTGGTTGTGAG674CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCS01_05ac07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ac07, mRNA sequence.
CB292795.1:659-678
AGTACTGGCTGTTCCCACCCTGGTTGTGAG659CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
USDA-FP_121000-741 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-40_G12 5', mRNA sequence.
CF506243.1:13-32
CCTGGTTGTGAG13CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCR01_01C19_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C19, mRNA sequence.
CF828170.1:378-397
AGTACTGGCTGTTCCCACCCTGGTTGTGAG378CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCR01_01C20_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C20, mRNA sequence.
CF828172.1:379-398
AGTACTGGCTGTTCCCACCCTGGTTGTGAG379CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCR01_05N10_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05N10, mRNA sequence.
CF831127.1:623-642
AGTACTGGCTGTTCCCACCCTGGTTGTGAG623CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
CGF1004438_H08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_H08 5', mRNA sequence.
CK938736.1:576-595
AGTACTGGCTGTTCCCACCCTGGTTGTGAG576CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
CGF1004438_E07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_E07 5', mRNA sequence.
CK938768.1:386-405
AGTACTGGCTGTTCCCACCCTGGTTGTGAG386CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCS06_0002E03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E03, mRNA sequence.
CN189682.1:656-675
AGTACTGGCTGTTCCCACCCTGGTTGTGAG656CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCC
UCRPT01_0010M12_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0010M12, mRNA sequence.
CV708088.1:681-700
AGTACTGGCTGTTCCCACCCTGGTTGTGAG681CCGGCATATCCTACTCCAAAGTGTGTGAAGAAGTGCGTCAAGAAAAACCA
UCRPT01_0013C10_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0013C10, mRNA sequence.
CV709625.1:647-666
AGTACTGGCTGTTCCCACCCTGGTTGTGAG647CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCS04_2_012D12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_D12, mRNA sequence.
CV885077.1:640-659
AGTACTGGCTGTTCCCACCCTGGTTGTGAG640CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCS04_2_020E05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_020_T3_E05, mRNA sequence.
CV886017.1:618-637
AGTACTGGCTGTTCCCACCCTGGTTGTGAG618CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCS04_2_022A06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_022_T3_A06, mRNA sequence.
CV886258.1:643-662
AGTACTGGCTGTTCCCACCCTGGTTGTGAG643CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
C01017F04SK Veg1 Citrus clementina cDNA clone C01017F04, mRNA sequence.
CX288181.1:637-656
AGTACTGGCTGTACCCACCCTGGTTGTGAG637CCGGCATATCCTACTCCAAAGTGTGTG
C02014G03SK IF1 Citrus clementina cDNA clone C02014G03, mRNA sequence.
CX289566.1:98-117
AGTACTGGCTGTTCCCACCCTGGTTGTGAG98CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
C05065B07SK DroRLeaf1 Citrus clementina cDNA clone C05065B07, mRNA sequence.
CX294968.1:533-552
AGTACTGGCTGTTCCCACCCTGGTTGTGAG533CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
C06021C10SK FlavCurFr1 Citrus clementina x Citrus tangerina cDNA clone C06021C10, mRNA sequence.
CX299328.1:97-116
AGTACTGGCTGTTCCCACCCTGGTTGTGAG97CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRPT02_59E09_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-59E09-I18-1-5.g, mRNA sequence.
CX642330.1:308-327
AGTACTGGCTGTTCCCACCCTGGTTGTGAG308CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCP01_030_H10_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_030_T3_H10, mRNA sequence.
CX667392.1:458-477
AGTACTGGCTGTTCCCACCCTGGTTGTGAG458CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
Citrus unshiu mRNA, clone: ANT0498, 5'-end sequence, expressed in anther.
DC883778.1:671-690
AGTACTGGCTGTTCCCACCCTGGTTGTGAG671CCGGCATATCCTACTCCAAAGTGTGTGAGGAAAGTGCGTCAAGAAAAACC
Citrus unshiu mRNA, clone: ANT2_1560, 5'-end sequence, expressed in anther.
DC884924.1:496-515
AGTACTGGCTGTTCCCACCCTGGTTGTGAG496CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
Citrus nobilis x Citrus kinokuni mRNA, clone: EGJ_1278, 5'-end sequence, expressed in ovule.
DC886996.1:669-688
AGTACTGGCTGTTCCCACCCTGGTTGTGAG669CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
Citrus unshiu mRNA, clone: STG0269, 5'-end sequence, expressed in style.
DC898228.1:672-691
AGTACTGGCTGTTCCCACCCTGGTTGTGAG672CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCA01_04H06_r Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0004H06, mRNA sequence.
DN624065.1:646-665
AGTACTGGCTGTTCCCACCCTGGTTGTGAG646CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
UCRCA01_04J15_r Bark of Madame Vinous Sweet Orange Scion on Standard Sour Orange Rootstock, Citrus Tristeza Virus Challenged - UCRCA01 Citrus aurantium cDNA clone CA_SEa0004J15, mRNA sequence.
DN624165.1:643-662
AGTACTGGCTGTTCCCACCCTGGTTGTGAG643CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
USDA-FP/ARO_12223 Star Ruby grapefruit temperature-conditioned flavedo cDNA Citrus x paradisi cDNA clone Cond-13_G06 5', mRNA sequence.
DN797355.1:373-392
AGTACTGGCTGTTCCCACCCTGGTTGTGAG373CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
USDA-FP/ARO_13123 Star Ruby grapefruit temperature-conditioned flavedo cDNA Citrus x paradisi cDNA clone Cond-33_C11 5', mRNA sequence.
DN798255.1:373-392
AGTACTGGCTGTTCCCACCCTGGTTGTGAG373CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
USDA-FP/ARO_15212 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-23_F07 5', mRNA sequence.
DN959382.1:680-699
AGTACTGGCTGTTCCCACCCTGGTTGTGAG680CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
USDA-FP/ARO_15448 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-26_E04 5', mRNA sequence.
DN959618.1:147-166
AGTACTGGCTGTTCCCACCCTGGTTGTGAG147CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
USDA-FP/ARO_15687 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-30_D06 5', mRNA sequence.
DN959857.1:64-83
AGTACTGGCTGTTCCCACCCTGGTTGTGAG64CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
USDA-FP_19328 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-27_E06 5', mRNA sequence.
DR911200.1:279-298
AGTACTGGCTGTTCCCACCCTGGTTGTGAG279CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
KN0AAP8YB16FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence.
DY270890.1:662-681
AGTACTGGCTGTTCCCACCCTGGTTGTGAG662CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
Volcani_7_09_G6 Volcani07 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX447549.1:367-386
AGTACTGGCTGTTCCCACCCTGGTTGTGAG367CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
CS00-C1-101-020-G10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
EY660308.1:702-721
AGTACTGGCTGTTCCCACCCTGGTTGTGAG702CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAACCAG
CS00-C1-102-090-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY671971.1:664-683
AGTACTGGCTGTTTCCACCCTGGTTGGGAG664CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAAAAAACCAG
CS00-C3-700-032-G09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY695098.1:666-685
AGTACTGGCTGTTCCCACCCTGGTTGTGAG666CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
CS00-C3-700-068-D04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY698139.1:619-638
AGTACTGGCTGTTCCCACCCTGGTTGTGAG619CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAACCAG
CS00-C3-700-086-A08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY699684.1:663-682
AGTACTGGCTGTTCCCACCCTGGTTGTGAG663CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
CS00-C3-701-023-C03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY703652.1:615-634
AGTACTGGCTGTTCCCACCCTGGTTGTGAG615CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
CS00-C3-701-031-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY704337.1:104-123
AGTACTGGCTGTTCCCACCCTGGTTGTGAG104CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
CS00-C3-702-038-E07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY714105.1:283-302
AGTACTGGCTGTTCCCACCCTGGTTGTGAG283CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
CS00-C3-705-045-A02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY738564.1:570-589
TACTGGCTGTTCCCACCCTGGGTTGTGAGG570CCGGCATATCCTACTCCAAAGTGTGGTGAGGGAGTGGGGTCGGAAGAAGC
CR05-C1-100-002-H02-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY758336.1:454-473
AGTACTGGCTGTTCCCACCCTGGTTGTGAG454CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
CR05-C1-103-053-C12-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY779598.1:259-278
AATACTGGCTGTTCCCACCCTGGTTGTGAG259CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
CR05-C3-702-095-E07-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence.
EY809657.1:779-798
AATACTGGCTGGTCCCACCCTGGTTGTGAG779CCGGCATATCCTACTCCAAAGTGGGGGGAAGAAATGGCGTCAAAAA
PT11-C1-901-028-E05-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, mRNA sequence.
EY821281.1:227-246
AGTACTGGCTGTTCCCACCCTGGTTGTGAG227CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
PT11-C2-301-011-F08-CT.F Poncirus trifoliata bark, infected with Phytophthora parasitica Citrus trifoliata cDNA, mRNA sequence.
EY834554.1:637-656
AGTACTGGCTGTTCCCACCCTGGTTGTGAG637CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:21650831-21650850
AGTACTGGCTGTTCCCACCCTGGTTGTGAG21650831CCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTCAAGAAAAACCA
Hyppa rectilinea genome assembly, chromosome: 9.
OX637309.1:2746703-2746722
TCAATAATAATATTAAAAAACTAGATGTGG2746703CCGGCATATCCTACTCCAAAAAAAGGCCGAAACAAACTCAGAGGTGAAAA

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