GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-17 15:37:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Trifolium repens isolate ACLI19 chromosome 06_0cc.
CP125846.1:2937049-2937068
GTATTTTACGTTGGTTTATCTTCTTCTAAA2937049CCGGGTAATCGAATTGAAGAAACGAAAAGAACAGAGAAAAAACAGGGGAG
Trifolium repens isolate ACLI19 chromosome 06_Pall.
CP125847.1:2503544-2503563
GTATTTTACGTTGGTTTATCTTCTTCTAAA2503544CCGGGTAATCGAATTGAAGAAACGAAAAGAACAGAGAAAAAACAGGGGAG
Trifolium fragiferum genome assembly, chromosome: 1.
OX940789.1:3276872-3276891
TATTTTTACGTTGGTTTATCTTCTTCTAAA3276872CCGGGTAATCGAATTGAAGAAACGAAAAGAACAGAGAAAAAACAGGGGAG
Caradrina clavipalpis genome assembly, chromosome: Z.
OW052087.1:15292247-15292266
CAGTGATGTGTTGGCTCATTTGTTAGTGTT15292247CCGGGTAATCGAATTGAAGACATGAACGCTTGCTAATTGAACTATGTAAG
Charanyca ferruginea genome assembly, chromosome: Z.
OX376055.1:19761882-19761901
CAGTGATGTGTTGGCTCATTTGTTAGTGTT19761882CCGGGTAATCGAATTGAAGACATAAATGCTTGCTAATTAAACTAAGCAAC
Caradrina kadenii genome assembly, chromosome: Z.
OX381672.1:14414882-14414901
CAGTGATGTGTTGGGTAATTTGTTAGTGTT14414882CCGGGTAATCGAATTGAAGACATGAACGCTTGCTAATTGAACTATGTAAG
Hoplodrina ambigua genome assembly, chromosome: Z.
OX458963.1:13252530-13252549
CAGTGATGTGTTGGCTCATTTGTTAGTGTT13252530CCGGGTAATCGAATTGAAGACATGAATGCTTGCTAATTGAACTATGTAAG
Polydrusus tereticollis genome assembly, chromosome: 2.
OY755256.1:1755217-1755236
AAAAATGCTGAGGCTGTTTTGATCCCAAAC1755217CCGGGTAATCGAATTGAAGATTTCGTGTATGAAAAAATTGAGAAAAAACG
Polydrusus tereticollis genome assembly, chromosome: 2.
OY987327.1:1662422-1662441
AAAAATGCTGAGGCTGTTTTGATCCCAAAC1662422CCGGGTAATCGAATTGAAGATTTCGTGTATGAAAAAATTGAGAAAAAACG
Trifolium repens mRNA, clone: WCC35k16_061, unspecified EST.
FY466526.1:280-299
CTCCCCTGTTTTTTCTCTGTTCTTTTCGTT280TCTTCAATTCGATTACCCGGTTTAGAAGAAGATAAACCAACGCATGGATC
TSA: Vicia faba contig02928.VifaIA mRNA sequence.
JR967058.1:75-94
CTCTTTTTCTTTTTTCCCTGTTTTTTCGTT75TCTTCAATTCGATTACCCGGTTTGGATGAAGATAAGCCCACGGTGATCGG
Vicia faba genome assembly, chromosome: 1S.
OX451735.1:950041851-950041870
CTCTTTTTCTTTTTCCCCTGTTTTTTCGTT950041851TCTTCAATTCGATTACCCGGTTTGGATGAAGATAAGCCCACGTAATGATA
Trifolium subterraneum genome assembly, chromosome: 5.
OX637465.1:26534325-26534344
CTCCCCTGTTTTTTCTCTGTTTTTTTCGTT26534325TCTTCAATTCGATTACCCGGTTTAGAAGAAGATAAACCAACGTAAAATAC
Trifolium dubium genome assembly, chromosome: 5.
OX638066.1:48993323-48993342
TTCCCATGTTTTTTCTCTGTTCTTTTTGTT48993323TCTTCAATTCGATTACCCGGTTCTGATGAAGATGATAAAGCAACGTAAAT
Erodium maritimum genome assembly, chromosome: 8.
OY997595.1:2704604-2704623
ATCATTCCCCAAATCAATTCGGGGAAATAA2704604TCTTCAATTCGATTACCCGGTCTGACTTTGATACCATGTTAAAGCCCCCG
Hoplodrina blanda genome assembly, chromosome: Z.
OX438578.1:11057490-11057509
CTTACATAGTTCAATTAGCAAGCATTCATG11057490TCTTCAATTCGATTACCCGGAACACTAACAAATGAGCCAACACATCACTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGGGTAATCGAATTGAAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGGGTAATCGAATTGAAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.128 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=CCGGGTAATCGAATTGAAGA&k=0&no_gap=0&offset=0&limit=50
0.290 | 0.163 | search_minus_done; http://172.18.8.135:50400/match?q=TCTTCAATTCGATTACCCGG&k=0&no_gap=0&offset=0&limit=41
0.295 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).