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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:52:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Botrytis cinerea B05.10 chromosome BCIN12, complete sequence.
CP009816.1:455569-455586
GACCACCATAATGGATCATATGGCATGAAA455569CCGTAAGGAGAAGGCGGTCCAGGGCTCAACGGATCTACGCCAAGTCTC
Botrytis cinerea strain Vv3 chromosome 12.
CP080972.1:471366-471383
GACCACCATAATGGATCATATGGCATGAAA471366CCGTAAGGAGAAGGCGGTCCAGGGCTCAACGGATCTACGCCAAGTCTC
Botrytis cinerea strain Sl3 chromosome 12.
CP080990.1:477914-477931
GACCACCATAATGGATCATATGGCATGAAA477914CCGTAAGGAGAAGGCGGTCCAGGGCTCAACGGATCTACGCCAAGTCTC
Botryotinia fuckeliana T4 SupSuperContig_67r_197_1 genomic supercontig.
FQ790348.1:166625-166642
GACCACCATAATGGATCATATGGCATGAAA166625CCGTAAGGAGAAGGCGGTCCAGGGCTCAACGGATCTACGCCAAGTCTC
Pseudoroseomonas cervicalis strain PL22-11A chromosome, complete genome.
CP115851.1:530966-530983
GCTGAGTCCGGGAGGCTGATGCTTACCTTC530966CCGTAAGGAGAAGGCGGTCCGGACCGGTGCGGCAAGCGCGGGCCGGGC
Methylobacterium indicum strain JDJ13 chromosome, complete genome.
CP121700.1:5194984-5195001
ATCGCGGATCGCCGGCGGCAGGGCGGCGTC5194984CCGTAAGGAGAAGGCGGTGCCGTAATGCAGCCGCAGCAGGCGCCGCAT
Sus scrofa genome assembly, chromosome: 10.
OY997217.1:27455376-27455393
ACTCCAGGTACCCTGGGGGCTCCTTCCAGC27455376ACCGCCTTCTCCTTACGGCTGAGGAAGCCTCCTCTGAGTCTCACCTAA
Erpetoichthys calabaricus genome assembly, chromosome: 16.
LR536447.2:96766683-96766700
GCTACAGCACGATGCATCAGGGTGTCCTAA96766683ACCGCCTTCTCCTTACGGTTATTGTCTGCCAGATTTGGCCTCACCCAG
Porphyra yezoensis cDNA, clone:PFL016d06_r, 5'end.
AU191425.1:441-458
TGGACACAATCACGGGGTTGGCGGCACCCC441ACCGCCTTCTCCTTACGGCGACGTCCGACTGCTTCCGTCGGGATTGCC
Vigna unguiculata cultivar Xiabao 2 chromosome Vu01.
CP039350.1:17677225-17677242
ACCACAGTGTTCCCAGCAGCTTTAGCCTTC17677225ACCGCCTTCTCCTTACGGAGGGTTTGGAAAAGTGTCAAGTTCTTCTTG
Chrysanthemum makinoi genome assembly, chromosome: 7.
OU343223.1:38623860-38623877
ACATGTTAAACACGAGGGGTGTTTGTCTCT38623860ACCGCCTTCTCCTTACGGACGGCGGTGGTGAGGTTTCGTATTCGAGTC
Moorella sp. Hama-1 DNA, complete genome.
AP024620.1:2732322-2732339
CCATAATCGGCGGTGGTACCCTGAACCGTT2732322ACCGCCTTCTCCTTACGGCCTGAGGAAATATTGGCCTGGTTGAAGCTG
Nocardia sp. NBC_01503 chromosome, complete genome.
CP109596.1:243401-243418
AGATTGGCCTGCATCGCATCGAGTTTGCGG243401ACCGCCTTCTCCTTACGGCGGCGGTGTTTGAGCACGCCAGCGGCCTCT
Miltochrista miniata genome assembly, chromosome: 12.
OW121759.1:32871671-32871688
TAGTAAGTTTTCTATATTTGCTGTCTTGCT32871671ACCGCCTTCTCCTTACGGGTAAGGAGTTGTTCGGGGTAAAGTCGCTTA
Anopheles nili genome assembly, chromosome: 2.
OX031310.1:65109285-65109302
GAACGTTGACAAGACGCCAAACCGCGGAGG65109285ACCGCCTTCTCCTTACGGGTTGTCTTCTGAAAGCCGAGAACGAGGCAC
Alentia gelatinosa genome assembly, chromosome: 8.
OX465586.1:25524231-25524248
TTGTTCCTCCTAACTTTCCGCCCTCTTGGC25524231ACCGCCTTCTCCTTACGGCTATATTTGGCGCCAAAATCAGTGAGTCTC
Dasysyrphus tricinctus genome assembly, chromosome: 4.
OY992533.1:93134512-93134529
ATTCACAGCTCACACCCTTTTTTGAAAAAA93134512ACCGCCTTCTCCTTACGGGGGCGAACCCGAATTCAAATTGTACAAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGTAAGGAGAAGgCGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGTAAGGAGAAGgCGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.178 | 0.170 | search_plus_done; http://172.18.8.135:50400/match?q=CCGTAAGGAGAAGGCGGT&k=0&no_gap=0&offset=0&limit=50
0.302 | 0.123 | search_minus_done; http://172.18.8.135:50400/match?q=ACCGCCTTCTCCTTACGG&k=0&no_gap=0&offset=0&limit=44
0.309 | 0.007 | cgi_end;

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