GGGenome | Results

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2025-03-15 08:49:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Raphanus sativus var. sativus RNA, contig: WG3_13131.
FX660884.1:1199-1218

GAGGAGGAATCTATACCGCTAATGGGCCGT1199CCGTAATCGTCGAACAAGGTCGAATTCGATGATTTAGGAGCTGTCCCACG

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7567.
FX695310.1:1231-1250

GAGGAGGAATCAGAGACGCTGATGGGGCGT1231CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2288.
FX728566.1:1198-1217

GAGGAGGAATCAGAGACGCTGATGGGGCGT1198CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG

TSA: Raphanus sativus RS14864 mRNA sequence.
JT799411.1:1195-1214

GAGGAGGAATCTATACCGCTAATGGGCCGT1195CCGTAATCGTCGAACAAGGTCGAATTCGATGATTTAGGAGCTGTCCCACG

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042N05, complete sequence.
AC189346.2:80803-80822

GAGGAGGAATCAGAGACGCTGATGGGGCGT80803CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058M10, complete sequence.
AC189405.2:43860-43879

GAGGAGGAATCAGAGACGCTGATGGGGCGT43860CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG

Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:20443797-20443816

GAGGAGGAATCAGAGACGCTGATGGGCCGT20443797CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG

Brassica napus genome assembly, chromosome: A08.
HG994362.1:22951899-22951918

GAGGAGGAATCAGAGACGCTGATGGGGCGT22951899CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG

Brassica rapa genome, scaffold: A08.
LR031575.1:21798565-21798584

GAGGAGGAATCAGAGACGCTGATGGGGCGT21798565CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG

Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:25215135-25215154

GAGGAGGAATCTATACCGCTAATGGGCCGT25215135CCGTAATCGTCGAACAAGGTCGAATTCGATGATTTAGGAGCTGTCCCACG

Brassica rapa genome assembly, chromosome: A08.
LS974624.2:27584785-27584804

GAGGAGGAATCAGAGACGCTGATGGGGCGT27584785CCGTAATCGTCGAACAAGGTCGAGTTCGATGATTTGGGCGCTGTTCCACG

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a002L05_SP6.
AM056999.1:260-279

CGTGGAACAGCGCCCAAATCATCGAACTCG260ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC

Brassica oleracea var. viridis mRNA, clone: KALE-019E15, 5' end sequence.
DK462926.1:635-654

CGTGGAACAGCGCCCAAATCATCGAACTCG635ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC

Brassica oleracea var. viridis mRNA, clone: KALE-068M24, 5' end sequence.
DK481853.1:715-734

CGTGGGACAGCGCCCAAATCATCGAACTCG715ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC

Brassica oleracea var. viridis mRNA, clone: KALE-136A14, 5' end sequence.
DK507574.1:742-761

CGTGAAACAGCGCCCAAATCATCGAACTCG742ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC

59ACAB6_UP_014_G12_26JUL2004_084 Brassica napus 59ACAB6 Brassica napus cDNA 5', mRNA sequence.
EE420763.1:719-738

CGTGGAACAGCGCCCAAATCATCGAACTCG719ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATT

36RDBRG_UP_025_C12_11JUN2004_092 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE518252.1:681-700

CGTGGAACAGCGCCCAAATCATCGAACTCG681ACCTTGTTCGACGATTACGGACGGCCCATCA

BNARO4GH_T3_008_H03_24NOV2006_017 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES903107.1:722-741

CGTGGAACAGCGCCCAAATCATCGAACTCG722ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC

BNARO4GH_T3_020_B07_24NOV2006_061 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES904532.1:676-695

CGTGGAACAGCGCCCAAATCATCGAACTCG676ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

0118764 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV113452.1:755-774

CGTGGAACAGCGCCCAAATCATCGAACTCG755ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTTCCTCCT

0121923 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV116611.1:752-771

CGTGGAACAGCGCCCAAATCATCGAACTCG752ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC

0121966 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV116654.1:728-747

CGTGGAACAGCGCCCAAATCATCGAACTCG728ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

0089354 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV191873.1:225-244

CGTGGAACAGCGCCCAAATCATCGAACTCG225ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

0097747 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV196594.1:656-675

CGTGGAACAGCGCCCAAATCATCGAACTCG656ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

RS3B139TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW734564.1:48-67

CGTGGGACAGCTCCTAAATCATCGAATTCC48ACCTTGTTCGACGATTACGGACGACCCATCAGCGGTGTTGATTCCTCCTC

BR008663 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-001H06 5', mRNA sequence.
EX024019.1:321-340

CGTGGAACAGCGCCCAAATCATCGAACTCG321ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

BR011005 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-033A09 5', mRNA sequence.
EX026361.1:320-339

CGTGGAACAGCGCCCAAATCATCGAACTCG320ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

BR018454 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-146F02 5', mRNA sequence.
EX033810.1:259-278

CGTGGAACAGCGCCCAAATCATCGAACTCG259ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

BR018625 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-149F10 5', mRNA sequence.
EX033981.1:275-294

CGTGGAACAGCGCCCAAATCATCGAACTCG275ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

BR018767 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-151F06 5', mRNA sequence.
EX034123.1:306-325

CGTGGAACAGCGCCCAAATCATCGAACTCG306ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

BR018844 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-152G07 5', mRNA sequence.
EX034200.1:321-340

CGTGGAACAGCGCCCAAATCATCGAACTCG321ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

BR019637 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-164F11 5', mRNA sequence.
EX034993.1:320-339

CGTGGAACAGCGCCCAAATCATCGAACTCG320ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

BR022826 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-042C10 5', mRNA sequence.
EX038182.1:102-121

CGTGGAACAGCGCCCAAATCATCGAACTCG102ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

BR022854 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-042F06 5', mRNA sequence.
EX038210.1:56-75

CGTGGAACAGCGCCCAAATCATCGAACTCG56ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

BR034667 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-054C09 5', mRNA sequence.
EX050023.1:116-135

CGTGGAACAGCGCCCAAATCATCGAACTCG116ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

RR3DS23TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY915261.1:48-67

CGTGGGACAGCTCCTAAATCATCGAATTCC48ACCTTGTTCGACGATTACGGACGACCCATCAGCGGTGTTGATTCCTCCTC

BN18DYSC_UP_030_F08_18FEB2008_054 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG555516.1:618-637

CGTGGAACAGCGCCCAAATCATCGAACTCG618ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

Raphanus sativus mRNA, clone: RSCS03F06, 5' end sequence.
FY446997.1:523-542

CGTGGAACAGCGCCTAAATCATCGAATTCC523ACCTTGTTCGACGATTACGGACGGCCCATTAGCGGTATAGATTCCTCCTC

Raphanus sativus mRNA, clone: RSCS09O21, 5' end sequence.
FY449273.1:790-809

CGTGGAACAGCGCCTAAATCATCGAATTCC790ACCTTGTTCGACGATTACGGACGGCCCATTAGCGGTATAGATTCCTCCTC

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_5353.
FX738162.1:861-880

CGTGGGACAGCTCCTAAATCATCGAATTCG861ACCTTGTTCGACGATTACGGACGGCCCATTAGCGGTATAGATTCCTCCTC

Brassica rapa subsp. pekinensis clone KBrB032F05, complete sequence.
FP102466.1:144425-144444

CGTGGAACAGCGCCCAAATCATCGAACTCG144425ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:3309556-3309575

CGTGGAACAGCGCCCAAATCATCGAACTCG3309556ACCTTGTTCGACGATTACGGACGCCCCATCAGCGTCTCTGATTCCTCCTC

Brassica napus genome assembly, chromosome: C08.
HG994372.1:21310462-21310481

CGTGGAACAGCGCCCAAATCATCGAACTCG21310462ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC

Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:30460933-30460952

CGTGGAACAGCGCCCAAATCATCGAACTCG30460933ACCTTGTTCGACGATTACGGACGGCCCATCAGCGTCTCTGATTCCTCCTC

Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:3679147-3679166

CGTGGGACAGCTCCTAAATCATCGAATTCG3679147ACCTTGTTCGACGATTACGGACGGCCCATTAGCGGTATAGATTCCTCCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.008 | 0.008 | search_start;
0.254 | 0.246 | search_plus_done; http://172.18.8.135:50400/match?q=CCGTAATCGTCGAACAAGGT&k=0&no_gap=0&offset=0&limit=50
1.818 | 1.564 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTTGTTCGACGATTACGG&k=0&no_gap=0&offset=0&limit=39
1.841 | 0.023 | cgi_end;

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