GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:40:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mdfw2024i03.y1 Mdfw Malus domestica cDNA clone Mdfw2024i03 5' similar to TR:Q9XHG0 Q9XHG0 NBS/LRR DISEASE RESISTANCE PROTEIN RPM1, mRNA sequence.
CN489674.1:432-452
CATGGAGGGATCAGGTTAATCAAAGAATTG432GGAAAGTTACGACAGCTACGGAAGTTAGGCCTGAAAAACTTGAAAAGTGAA
Mdlv3_4030p05.y1 Mdlv3 Malus domestica cDNA clone Mdlv3_4030p05 5' similar to TR:Q9ZQT3 Q9ZQT3 RPR1. [1], mRNA sequence.
CV883610.1:331-351
ATGGAGGGATCAGGTTAATCAAAGAATGTG331GGAAAGTTACGACAGCTACGGAAGTTAGGCCTGAAAAACTTGAAAAGTGAA
000529AEPA003520HT (AEPA) Pinkie expanding leaf Malus domestica cDNA clone AEPA003520, mRNA sequence.
EB111196.1:188-208
CATGGAGGGATCAGGTTAATCAAAGAATTG188GGAAAGTTACGACAGCTACGGAAGTTAGGCCTGAAAAACTTGAAAAGTGAA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40174936-40174956
CATGGAGGGATCAGGTTAATCAAAGAATTG40174936GGAAAGTTACGACAGCTACGGAAGTTAGGCCTAAAAAACTTGAAAAGTGAA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29649171-29649191
CATGGAGGGATCAGGTTAATCAAAGAATTG29649171GGAAAGTTACGACAGCTACGGAAGTTAGGCCTAAAAAACTTGAAAAGTGAA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29251294-29251314
CATGGAGGGATCAGGTTAATCAAAGAATTG29251294GGAAAGTTACGACAGCTACGGAAGTTAGGCCTAAAAAACTTGAAAAGTGAA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25964916-25964936
CATGGAGGGATCAGGTTAATCAAAGAATTG25964916GGAAAGTTACGACAGCTACGGAAGTTAGGCCTAAAAAACTTGAAAAGTGAA
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29770497-29770517
CATGGAGGGATCAGGTTAATCAAAGAATTG29770497GGAAAGTTACGACAGCTACGGAAGTTAGGCCTAAAAAACTTGAAAAGTGAA
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26244171-26244191
CATGGAGGGATCAGGTTAATCAAAGAATTG26244171GGAAAGTTACGACAGCTACGGAAGTTAGGCCTAAAAAACTTGAAAAGTGAA
Meconema thalassinum genome assembly, chromosome: X.
OX336389.2:115346069-115346089
GTCTGAATCCGTTGACAAATGAGGTTGCCA115346069GGAAAGTTACGACAGCTACGGCAGAAAATTAAAAATACCTTAAGGGTCAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGTAGCTGTCGTAACTTTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGTAGCTGTCGTAACTTTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.267 | 0.258 | search_plus_done; http://172.18.8.135:50400/match?q=CCGTAGCTGTCGTAACTTTCC&k=0&no_gap=0&offset=0&limit=50
0.493 | 0.226 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAAGTTACGACAGCTACGG&k=0&no_gap=0&offset=0&limit=50
0.500 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).