GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 11:39:19, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Medicago truncatula EST MtBA08C08R1 : T7 end of clone MtBA08C08 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL366491.1:40-57
ATTATCATGTGTATTCAACTAGTTTGAAAC40CCGTCCCTCCACGAAACTAGTTTGAATAATTTGAATATTTTATATGTG
Medicago truncatula EST MtBA19G12R1 : T7 end of clone MtBA19G12 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL367875.1:180-197
ATTATCATGTGTATTCAACTAGTTTGAAAC180CCGTCCCTCCACGAAACTAGTTTGAATAATTTGAATATTTTATATATA
EST318007 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-54I7, mRNA sequence.
AW586384.1:362-379
ATTATCATGTGTATTCAACTAGTTTGAAAC362CCGTCCCTCCACGAAACTAGTTTGAATAATTTGAATATTTTATATGTG
Corylus americana cultivar Rush chromosome 3.
CP125816.1:23587616-23587633
AATTTCCGGCGATTCTGTTGCCGGTGCAAT23587616CCGTCCCTCCACGAAACTCATCTCCGGCGAACACTGTTTTGTTGGATA
Collybia sordida genome assembly, chromosome: 10.
OZ173912.1:402928-402945
ACTGTGAACCAGCCTGAACCAGCGACACGA402928CCGTCCCTCCACGAAACTATCTCACCTCAGGCTCTTCCAGTGACCTTC
Skermanella rosea strain KEMB 2255-458 chromosome, complete genome.
CP086111.1:3123734-3123751
CAGCAGCATGTTGACGTTGTCGTCCACCCG3123734CCGTCCCTCCACGAAACTGGACAGATCGGCGGCGATCTGGGTGCAGTG
Platichthys flesus genome assembly, chromosome: 7.
OX438722.1:19217113-19217130
AAGCCCCTTCTCGTATATTTGTTGGCTGGG19217113CCGTCCCTCCACGAAACTAGGTGGGAGGACGGGACATGAGCCAAGAAA
Skermanella pratensis strain W17 chromosome, complete genome.
CP030265.1:2264716-2264733
CATTGCACCCAGATCGCCGCCGATCTTTCC2264716AGTTTCGTGGAGGGACGGCGGGTGGACGACAACGTCAACATGCTGCTG
Skermanella mucosa strain KEMB 2255-438 chromosome SKMUc, complete sequence.
CP086106.1:2463368-2463385
CACTGCACCCAGATCGCCGCCGATCTTTCC2463368AGTTTCGTGGAGGGACGGCGGGTGGACGACAACGTCAACATGCTGCTG
Sphecodes monilicornis genome assembly, chromosome: 14.
OU565297.1:2017615-2017632
GCTCTACGGAGAATCGAATTCCTGAAGGAC2017615AGTTTCGTGGAGGGACGGTTGTTTCCAATAGACTGGAAGACTGATATA
Phragmataecia castaneae genome assembly, chromosome: 10.
OZ195557.1:20980207-20980224
TGAAAGTAGGTCCGCGGAATGGCGCTAACC20980207AGTTTCGTGGAGGGACGGACGTTCCCAGCTTCCTCCTCGCGGACGCGT
Poecilia reticulata strain Guanapo & Maculatus chromosome 9.
CP158537.1:35503078-35503095
GTCTGACGCTCAAGTCTCTGGACGTTTCAA35503078AGTTTCGTGGAGGGACGGCGTGTTGGTGAGGCGTCGGCCGCGGATCGG
Poecilia reticulata strain Guanapo & Maculatus chromosome 9.
CP158560.1:35503078-35503095
GTCTGACGCTCAAGTCTCTGGACGTTTCAA35503078AGTTTCGTGGAGGGACGGCGTGTTGGTGAGGCGTCGGCCGCGGATCGG
Poecilia reticulata genome assembly, chromosome: 9.
LR880653.1:32937279-32937296
GTCTGACGCTCAAGTCTCTGGACGTTTCAA32937279AGTTTCGTGGAGGGACGGCGTGTTGGTGAGGCGTCGGCCGCGGATCGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCGTCCCTCCACGAAACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGTCCCTCCACGAAACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.222 | 0.213 | search_plus_done; http://172.18.8.135:50800/match?q=CCGTCCCTCCACGAAACT&k=0&no_gap=0&offset=0&limit=50
0.328 | 0.106 | search_minus_done; http://172.18.8.135:50800/match?q=AGTTTCGTGGAGGGACGG&k=0&no_gap=0&offset=0&limit=43
0.333 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).