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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:58:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:22767387-22767409
TCGGCCTCCGAGGACCTTGTGGTGGGCCCA22767387CCGTCTTGGTCTTCTTCTTGTTCTACTTGTTCGTCCAATGCCAGGAGCTCTTC
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:22826880-22826902
TCGGCCTCCGAGGACCTTGTGGTGGGCCCA22826880CCGTCTTGGTCTTCTTCTTGTTCTACTTGTTCGTCCAATGCCAGGAGCTCTTC
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:21260170-21260192
TCGGCCTCCGAGGACCTTGTGGCGGGCCCA21260170CCGTCTTGGTCTTCTTCTTGTTCTACTTGTTCGTCCAATGCTAGGAGCTCTTC
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:22803977-22803999
TCGGCCTCCGAGGACCTTGTGGTGGGCCCA22803977CCGTCTTGGTCTTCTTCTTGTTCTACTTGTTCGTCCAATGCCAGGAGCTCTTC
Malus domestica genome assembly, chromosome: 17.
OU696693.1:22368900-22368922
TCGGCCTCCGAGGACCTTGTGGTGGGCCCA22368900CCGTCTTGGTCTTCTTCTTGTTCTACTTGTTCGTCCAATGCCAGGAGCTCTTC
Malus domestica genome assembly, chromosome: 17.
OU744558.1:23768281-23768303
TCGGCCTCCGAGGACCTTGTGGTGGGCCCA23768281CCGTCTTGGTCTTCTTCTTGTTCTACTTGTTCGTCCAATGCCAGGAGCTCTTC
Malus domestica genome assembly, chromosome: 17.
OU744969.1:22570386-22570408
TCGGCCTCCGAGGACCTTGTGGTGGGCCCA22570386CCGTCTTGGTCTTCTTCTTGTTCTACTTGTTCGTCCAATGCCAGGAGCTCTTC
Triticum aestivum genome assembly, chromosome: 6D.
OV100754.1:441085396-441085418
ATCTTGAGAATGTCGGACCTCTTGCCTTCG441085396CCGTCTTGGTCTTCTTCTTGTTCGGATTGGGGTCGGATGTTGTGCCAACATGA
Triticum aestivum genome assembly, chromosome: 6D.
OW530327.1:441085396-441085418
ATCTTGAGAATGTCGGACCTCTTGCCTTCG441085396CCGTCTTGGTCTTCTTCTTGTTCGGATTGGGGTCGGATGTTGTGCCAACATGA
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:26963348-26963370
TCGGCCTCCGAGGACCTTGTGGCGGGCCCA26963348CCGTCTTGGTCTTCTTCTTGTTCTACTTGTTCGTCCAATGCCAGGAGCTCTTC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH064_02306m, 5' end sequence.
AB450735.1:286-308
GAAGAGCTCCTGGCATTGGATGAACAAGTA286GAACAAGAAGAAGACCAAGACGGGGGGCCCGCCACAAGGTCTTTGGAGGCCGA
010305AASA001240HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA001240, mRNA sequence.
CN880975.1:223-245
GAAGAGCTCCTGGCATTGGACGAACAAGTA223GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
010630AAZA004037HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA004037, mRNA sequence.
CN897007.1:223-245
GAAGAGCTCCTGGCATTGGACGAACAAGTA223GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
010630AAZA004049HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA004049, mRNA sequence.
CN897014.1:223-245
GAAGAGCTCCTGGCATTGGACGAACAAGTA223GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
010701AAZA003172HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA003172, mRNA sequence.
CN897488.1:223-245
GAAGAGCTCCTGGCATTGGACGAACAAGTA223GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
011009AVBC130066PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC130066, mRNA sequence.
CN945307.1:258-280
GAAGAGCTCCTGGCATTGGACGAACAAGTA258GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
Mdrta1012M09.g1 Apple_EST_Mdrta Malus domestica cDNA similar to ref|NP_188232.1| protein disulfide isomerase family [Arabidopsis thaliana], mRNA sequence.
DT001378.1:211-233
GAAGAGCTCCTGGCATTGGACGAACAAGTA211GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
Mdrtp1009C10.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA similar to ref|NP_188232.1| protein disulfide isomerase family [Arabidopsis thaliana], mRNA sequence.
DT041911.1:280-302
GAAGAGCTCCTGGCATTGGACGAACAAGTA280GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
Pyrus pyrifolia mRNA, clone: NFR1_03_06, 5' end sequence, expressed in fruit.
HX745882.1:286-308
GAAGAGCTCCTGGCATTGGATGAACAAGTA286GAACAAGAAGAAGACCAAGACGGGGGGCCCGCCACAAGGTCTTTGGAGGCCGA
Pyrus pyrifolia mRNA, clone: NFR1_03_18, 5' end sequence, expressed in fruit.
HX745892.1:286-308
GAAGAGCTCCTGGCATTGGATGAACAAGTA286GAACAAGAAGAAGACCAAGACGGGGGGCCCGCCACAAGGTCTTTGGAGGCCGA
Pyrus pyrifolia mRNA, clone: NFR1_03_22, 5' end sequence, expressed in fruit.
HX745895.1:286-308
GAAGAGCTCCTGGCATTGGATGAACAAGTA286GAACAAGAAGAAGACCAAGACGGGGGGCCCGCCACAAGGTCTTTGGAGGCCGA
Pyrus pyrifolia mRNA, clone: NFR1_03_41, 5' end sequence, expressed in fruit.
HX745914.1:286-308
GAAGAGCTCCTGGCATTGGATGAACAAGTA286GAACAAGAAGAAGACCAAGACGGGGGGCCCGCCACAAGGTCTTTGGAGGCCGA
Pyrus pyrifolia mRNA, clone: NFR1_03_55, 5' end sequence, expressed in fruit.
HX745927.1:286-308
GAAGAGCTCCTGGCATTGGATGAACAAGTA286GAACAAGAAGAAGACCAAGACGGGGGGCCCGCCACAAGGTCTTTGGAGGCCGA
Pyrus pyrifolia mRNA, clone: NFR1_03_62, 5' end sequence, expressed in fruit.
HX745934.1:286-308
GAAGAGCTCCTGGCATTGGATGAACAAGTA286GAACAAGAAGAAGACCAAGACGGGGGGCCCGCCACAAGGTCTTTGGAGGCCGA
TSA: Pyrus pyrifolia mRNA, contig: contig_1525.
FX395637.1:109-131
GAAGAGCTCCTGGCATTGGATGAACAAGTA109GAACAAGAAGAAGACCAAGACGGGGGGCCCGCCACAAGGTCTTTGGAGGCCGA
TSA: Pyrus x bretschneideri Unigene89722_XinShao mRNA sequence.
JR673295.1:6-28
AAGTA6GAACAAGAAGAAGACCAAGACGGGGGGCCCGCCACAAGGTCTTTGGAGGCCGA
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:11186311-11186333
GAAGAGCTCCTGGCATTGGACGAACAAGTA11186311GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:11222904-11222926
GAAGAGCTCCTGGCATTGGACGAACAAGTA11222904GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
Triticum aestivum genome assembly, chromosome: 7D.
LR862528.1:136756974-136756996
TGAAGTTGGGACAACATCCGATCCGAATCC136756974GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
LR862549.1:137328641-137328663
TGAAGTTGGGACAACATCCGATCCGAATCC137328641GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
LR862570.1:138586853-138586875
TGAAGTTGGGACAACATCCGATCCGAATCC138586853GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
LR865478.1:138854578-138854600
TGAAGTTGGGACAACATCCGATCCGAATCC138854578GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
LR865499.1:138460977-138460999
TGAAGTTGGGACAACATCCGATCCGAATCC138460977GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
LR865520.1:139398510-139398532
TGAAGTTGGGACAACATCCGATCCGAATCC139398510GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
LR865759.1:139409778-139409800
TGAAGTTGGGACAACATCCGATCCGAATCC139409778GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
LR865780.1:135548577-135548599
TGAAGTTGGGACAACATCCGATCCGAATCC135548577GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
LR877329.1:138675577-138675599
TGAAGTTGGGACAACATCCGATCCGAATCC138675577GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
LR878455.1:136428222-136428244
TGAAGTTGGGACAACATCCGATCCGAATCC136428222GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
LS992100.1:136918763-136918785
TGAAGTTGGGACAACATCCGATCCGAATCC136918763GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
OU015741.1:145861850-145861872
TGAAGTTGGGACAACATCCGATCCGAATCC145861850GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
OU343189.1:147878409-147878431
TGAAGTTGGGACAACATCCGATCCGAATCC147878409GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Malus domestica genome assembly, chromosome: 17.
OU745007.1:24884760-24884782
GAAGAGCTCCTGGCATTGGACGAACAAGTA24884760GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
Triticum aestivum genome assembly, chromosome: 7D.
OU963892.1:139524441-139524463
TGAAGTTGGGACAACATCCGATCCGAATCC139524441GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
OV100757.1:139245568-139245590
TGAAGTTGGCACAACATCCGATCCTAATCC139245568GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAGGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
OW530330.1:139245568-139245590
TGAAGTTGGCACAACATCCGATCCTAATCC139245568GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAGGTCCGACATTCTCAAGAT
Triticum aestivum genome assembly, chromosome: 7D.
OX637245.1:101145478-101145500
TGAAGTTGGGACAACATCCGATCCGAATCC101145478GAACAAGAAGAAGACCAAGACGGCGAAGGCAAGAAGTCCGACATTCTCAAGAT
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:11179022-11179044
GAAGAGCTCCTGGCATTGGACGAACAAGTA11179022GAACAAGAAGAAGACCAAGACGGTGGGCCCACCACAAGGTCCTCGGAGGCCGA
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:8729439-8729461
GAAGAGCTCCTGGCATTGGATGAACAAGTA8729439GAACAAGAAGAAGACCAAGACGGGGGGCCCGCCACAAGGTCTTCGGAGGCCGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGTCTTGGTCTTCTTCTTGTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGTCTTGGTCTTCTTCTTGTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.187 | 0.178 | search_plus_done; http://172.18.8.135:50400/match?q=CCGTCTTGGTCTTCTTCTTGTTC&k=0&no_gap=0&offset=0&limit=50
1.071 | 0.883 | search_minus_done; http://172.18.8.135:50400/match?q=GAACAAGAAGAAGACCAAGACGG&k=0&no_gap=0&offset=0&limit=40
1.096 | 0.025 | cgi_end;

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