GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:23:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Barbus barbus genome assembly, chromosome: 17.
OW387184.1:24309879-24309898
TAATCATATACTTCGTATACTTTCATCAAC24309879CCGTTGACTTTCCACTTCTTTTAATTGTGCACACATATTGATGTCTTTGA
Rutilus rutilus genome assembly, chromosome: 14.
OX637946.1:19318810-19318829
TAATCATATACTTCATATACTTTCATCAGC19318810CCGTTGACTTTCCACTTCTTTTAATCGATGTCTTTGAAGCAAGTCTAAAA
TSA: Centris flavifrons Contig39843.Cefl mRNA sequence.
JI023102.1:91-110
GTTATTATAATTAGCGTTGTCGTACTCTTT91CCGTTGACTTTCCACTTCTTGTTGAATGATGTCTAACAACGTAGAACTTT
Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14.
BX511227.7:11067-11086
TCAAAGCCATCAATATGTGTGCACAATTAA11067AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Danio rerio strain T5D chromosome 6.
CP068740.1:46900779-46900798
TCAAAGCCATCAATATGTGTGCACAATTAA46900779AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Danio rerio strain T5D chromosome 14.
CP068748.1:31064959-31064978
TCAAAGCCATCAAAATGTGTGCACAATTAA31064959AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Danio rerio strain Tubingen chromosome 14.
CP137027.1:35921440-35921459
TCAAAGCCATCAATATGTGTGCACAATTAA35921440AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Cyprinus carpio genome assembly, scaffold: LG28, chromosome: 28.
LN590678.1:1824038-1824057
TCAAAGACATCAATATGTGTGCACAATTAA1824038AAGAAGTGGAAAGTCAACGGGCTGATGAAAGTATACGAAGTATATGATTA
Cyprinus carpio genome assembly, scaffold: LG28, chromosome: 28.
LN590678.1:11507677-11507696
TCAAAGACATCAATATGTGTGCACAATTAA11507677AAGAAGTGGAAAGTCAACGGGCTGATGAAAGTATACGAAGTATATGATTA
Danio rerio genome assembly, chromosome: 14.
LR812051.1:31904836-31904855
TCAAAGCCATCAATATGTGTGCACAATTAA31904836AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Danio rerio genome assembly, chromosome: 14.
LR812076.1:31258537-31258556
TCAAAGCCATCAATATGTGTGCACAATTAA31258537AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Danio aesculapii genome assembly, chromosome: 14.
LR812497.1:33522569-33522588
TCAAAGCCATCAATATGTGTGCACAATTAA33522569AAGAAGTGGAAAGTCAACGGCTAATGAAAGTATATGAAGTATATGATTAT
Danio kyathit genome assembly, chromosome: 14.
LR812532.1:37663273-37663292
TCAAAGACATCAATATGTGTGCACAATTAA37663273AAGAAGTGGAAAGTCAACGGCTGATGAAAGTATATGAAGTATATGATTAT
Danio rerio strain Cooch Behar (CB) genome assembly, chromosome: 14.
LR812557.1:26677233-26677252
TCAAAGCCATCAATATGTGTGCACAATTAA26677233AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Danio rerio strain Nadia (NA) genome assembly, chromosome: 14.
LR812582.1:29222464-29222483
TCAAAGCCATCAAAATGTGTGCACAATTAA29222464AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Danio rerio genome assembly, chromosome: 14.
LR812607.1:28671314-28671333
TCAAAGCCATCAATATGTGTGCACAATTAA28671314AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Danio rerio genome assembly, chromosome: 14.
OX063303.1:35467116-35467135
TCAAAGCCATCAATATGTGTGCACAATTAA35467116AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Phoxinus phoxinus genome assembly, chromosome: 12.
OX424420.1:18839929-18839948
TTTTAGACTTGCTTCAAAGAGATCAATTAA18839929AAGAAGTGGAAAGTCAACGGGCTGATGAAAGTATACGGAGTATATGATTA
Squalius cephalus genome assembly, chromosome: 14.
OX439260.1:19687992-19688011
TTTTAGACTTGCTTCAAAGACATCGATTAA19687992AAGAAGTGGAAAGTCAACGGGCTGATGAAAGTATATGAAGTATATGATTA
TSA: Cannabis sativa PK04856.1_1.CasaPuKu mRNA sequence.
JP449386.1:646-665
GGAAAAGACCGAGGACAGTTAAGACAAGCG646AAGAAGTGGAAAGTCAACGGATGACTCATATTGCTGTTGAGAGAAATCGA
Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH73-228C5.
LO018019.2:2818-2837
TCAAAGCCATCAATATGTGTGCACAATTAA2818AAGAAGTGGAAAGTCAACGGCTGATCAAAGTATATGCAGTATATGATTAT
Haliclona (Haliclona) sp. KJP-2009 elongation factor 1 alpha (EF1a) mRNA, partial cds.
GQ330974.1:1095-1114
GTTTGCCGAACTAAAGGAAAAGATCGACAG1095AAGAAGTGGAAAGTCAACGGAAGACAACCCCAAGAGTGTGAAGAGTGGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGTTGACTTTCCACTTCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGTTGACTTTCCACTTCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.183 | 0.174 | search_plus_done; http://172.18.8.135:50400/match?q=CCGTTGACTTTCCACTTCTT&k=0&no_gap=0&offset=0&limit=50
0.352 | 0.169 | search_minus_done; http://172.18.8.135:50400/match?q=AAGAAGTGGAAAGTCAACGG&k=0&no_gap=0&offset=0&limit=47
0.364 | 0.013 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).