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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-16 19:44:37, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_4798, mRNA sequence.
JW922966.1:621-640
ACAAGACTAGCACGAATCGATGTATCCCCA621CCGTTGGTCTTGGACTCTCATAGCATACTATCTCTTGCCCAAAGGTTGCA
Cucumis melo isolate PI 511890 chromosome 2.
CP136103.1:9430227-9430246
ACAAAACTAGCACAAATCGATGTATCCCCA9430227CCGTTGGTCTTGGACTCTCATAGCATACTATCTCTTGGCCTACACAATTT
Citrullus amarus cultivar PI 296341-FR chromosome 3.
CP155265.1:18239606-18239625
ACAAAACCAACACAAAACGATGGATCCCCA18239606CCGTTGGTCTTGGACTCTCATAGCACACTATTTCTTGCCCTACGCATTCA
Citrullus amarus cultivar PI 189225 chromosome 3.
CP155276.1:16847382-16847401
ACAAAACCAACACAAAACGATGGATCCCCA16847382CCGTTGGTCTTGGACTCTCATAGCACACTATTTCTTGCCCTACGCATTCA
Citrullus amarus cultivar RCAT 055816 chromosome 3.
CP155287.1:18045736-18045755
ACAAAACCAACACAAAACGATGGATCCCCA18045736CCGTTGGTCTTGGACTCTCATAGCACACTATTTCTTGCCCTACGCATTCA
Citrullus amarus cultivar PI 271769 chromosome 3.
CP155298.1:18680080-18680099
ACAAAACCAACACAAAACGATGGATCCCCA18680080CCGTTGGTCTTGGACTCTCATAGCACACTATTTCTTGCCCTACGCATTCA
Citrullus amarus cultivar PI 482276 chromosome 3.
CP155320.1:17458323-17458342
ACAAAACCAACACAAAACGATGGATCCCCA17458323CCGTTGGTCTTGGACTCTCATAGCACACTATTTCTTGCCCTACGCATTCA
Citrullus colocynthis cultivar PI 537300 chromosome 3.
CP155342.1:16497818-16497837
ACAAAACCAACACAAAACGATGGATCCCCA16497818CCGTTGGTCTTGGACTCTCATAGCACACTATTTCTTGCCCTACGCATTCA
Citrullus colocynthis cultivar PI 525081 chromosome 3.
CP155353.1:16511297-16511316
ACAAAACCAACACAAAACGATGGATCCCCA16511297CCGTTGGTCTTGGACTCTCATAGCACACTATTTCTTGCCCTACGCATTCA
Citrullus colocynthis cultivar PI 632755 chromosome 3.
CP155386.1:16649237-16649256
ACAAAACCAACACAAAACGATGGATCCCCA16649237CCGTTGGTCTTGGACTCTCATAGCACACTATTTCTTGCCCTACGCATTCA
Citrullus rehmii cultivar PI 670011 chromosome 3.
CP155397.1:21448237-21448256
ACAAAACCAACACAAAACGGTGGATCCCCA21448237CCGTTGGTCTTGGACTCTCATAGCACACTATTTCTTGCCCTACGCATTCA
Cucumis melo genomic scaffold, anchoredscaffold00012.
LN681808.1:575967-575986
ACAAAACTAGCACAAATCGATGTATCCCCA575967CCGTTGGTCTTGGACTCTCATAGCATACTATCTCTTGGCCTACACAATTT
Cucumis melo genomic chromosome, chr_2.
LN713256.1:10934136-10934155
ACAAAACTAGCACAAATCGATGTATCCCCA10934136CCGTTGGTCTTGGACTCTCATAGCATACTATCTCTTGGCCTACACAATTT
Cucumis sativus CsFT mRNA for FT-like protein, complete cds.
AB383152.1:405-424
TGCAACCTTTGGGCAAGAGATAGTATGCTA405TGAGAGTCCAAGACCAACGGTGGGGATACATCGATTCGTGCTAGTCTTGT
Citrullus lanatus cultivar Allsugar chromosome 3.
CP155011.1:17885453-17885472
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17885453TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar Charleston Gray chromosome 3.
CP155144.1:17708390-17708409
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17708390TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar Calhoun Gray chromosome 3.
CP155155.1:17876319-17876338
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17876319TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar PKR6 chromosome 3.
CP155166.1:17828998-17829017
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17828998TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar Sugarlee chromosome 3.
CP155177.1:17889837-17889856
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17889837TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar ShiHongNo2 chromosome 3.
CP155188.1:17887770-17887789
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17887770TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar PI 288522 chromosome 3.
CP155199.1:17793449-17793468
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17793449TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar DaBanHongZiGua chromosome 3.
CP155210.1:18130335-18130354
TGAATGCGTAGGGCAAGAAATAGTGTGCTA18130335TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar PI 381740 chromosome 3.
CP155221.1:17897946-17897965
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17897946TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar SanBaiGua chromosome 3.
CP155232.1:17944910-17944929
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17944910TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar PI 254622 chromosome 3.
CP155243.1:18180247-18180266
TGAATGCGTAGGGCAAGAAATAGTGTGCTA18180247TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus cultivar HeiShanRen chromosome 3.
CP155254.1:17885453-17885472
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17885453TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus subsp. mucosospermus cultivar PI 595203 chromosome 3.
CP155309.1:17968660-17968679
TGAATGCGTAGGGCAAGAAATAGTGTGCTA17968660TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus lanatus subsp. mucosospermus cultivar PI 532732 chromosome 3.
CP155331.1:18216961-18216980
TGAATGCGTAGGGCAAGAAATAGTGTGCTA18216961TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus naudinianus cultivar PI 596694M chromosome 3.
CP155364.1:26192325-26192344
TGAATGCGTAGGGCAAGAGATAGTGTGCTA26192325TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus colocynthis cultivar PI 652554 chromosome 3.
CP155375.1:14770349-14770368
TGAATGCGTAGGGCAAGAAATAGTGTGCTA14770349TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus ecirrhosus cultivar PI 673135 chromosome 3.
CP155408.1:20451356-20451375
TGAATGCATAGGGCAAGAAATAGTGTGCTA20451356TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Citrullus colocynthis genome assembly, chromosome: 8.
OZ021742.1:14834159-14834178
TGAATGCGTAGGGCAAGAAATAGTGTGCTA14834159TGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGTTGGTTTTGT
Erebia triaria genome assembly, chromosome: 13.
OZ073208.1:1964482-1964501
ACATCAGATATTAGGGTTAATAATATAAAC1964482TGAGAGTCCAAGACCAACGGTCTTTTCGCAGATATTAAGAAAACGAAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCGTTGGTCTTGGACTCTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCGTTGGTCTTGGACTCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.394 | 0.386 | search_plus_done; http://172.18.8.135:50800/match?q=CCGTTGGTCTTGGACTCTCA&k=0&no_gap=0&offset=0&limit=50
0.536 | 0.141 | search_minus_done; http://172.18.8.135:50800/match?q=TGAGAGTCCAAGACCAACGG&k=0&no_gap=0&offset=0&limit=37
0.550 | 0.014 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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