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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-10 06:13:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

LjNEST49f2r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.
BI417302.1:104-123
CCTCTTCTTCTTCTTCTTCTTCTTGTTTCC104CCTAACATCAAATCCAACACACTCTCTCTCTCTCTCTCTCTGTGCCTTCG
Lotus japonicus cDNA, clone: LjCa-010-BF05, 5' end, suspension-cultured cells.
BW597267.1:72-91
CCTCTTCTTCTTCTTCTTCTTCTTGTTTCC72CCTAACATCAAATCCAACACACTCTCTCTCTCTCTCTCTCTGTGCCTTCG
Lotus japonicus cDNA, clone: LjFL2-030-DD09, 5' end, suspension-cultured cells treated with salicylic acid or methyljasmonate.
BW632188.1:96-115
CCTCTTCTTCTTCTTCTTCTTCTTGTTTCC96CCTAACATCAAATCCAACACACTCTCTCTCTCTCTCTCTCTGTGCCTTCG
LJNAJ30TF JCVI-LJ3 Lotus japonicus cDNA 5', mRNA sequence.
GO032183.1:97-116
CTTCTTCTTCTTCTTCTTCTTCTTGTTTCC97CCTAACATCAAATCCAACACACTCTCTCTCTCTCTCTGTGCCTTCGATTC
Dasypus novemcinctus clone VMRC5-375E23, WORKING DRAFT SEQUENCE, 5 ordered pieces.
AC152039.2:4491-4510
AAACCCTAGAGTTACCTTAACTGCTCTCTC4491CCTAACATCAAATCCAACACACTAAGTGTTAGAGCCAGACTTCCTGGGTT
Dasypus novemcinctus clone VMRC5-351G12, WORKING DRAFT SEQUENCE, 4 ordered pieces.
AC152377.2:154719-154738
AAACCCTAGAGTTACCTTAACTGCTCTCTC154719CCTAACATCAAATCCAACACACTAAGTGTTAGAGCCAGACTTCCTGGGTT
Lotus japonicus genomic DNA, chromosome 4, clone: LjB09H01, BM1084.
AP007795.2:13369-13388
CTTCTTCTTCTTCTTCTTCTTCTTGTTTCC13369CCTAACATCAAATCCAACACACTCTCTCTCTCTCTCTGTGCCTTCGATTC
Lotus japonicus clone JCVI-FLLj-11D6 unknown mRNA.
BT146275.1:97-116
CTTCTTCTTCTTCTTCTTCTTCTTGTTTCC97CCTAACATCAAATCCAACACACTCTCTCTCTCTCTCTGTGCCTTCGATTC
Lotus japonicus GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
FJ982319.1:97-116
CTTCTTCTTCTTCTTCTTCTTCTTGTTTCC97CCTAACATCAAATCCAACACACTCTCTCTCTCTCTCTGTGCCTTCGATTC
Lotus japonicus GAGA-binding transcriptional activator (BBR/BPC3) gene, complete cds.
FJ982320.1:97-116
CTTCTTCTTCTTCTTCTTCTTCTTGTTTCC97CCTAACATCAAATCCAACACACTCTCTCTCTCTCTCTGTGCCTTCGATTC
Alisma plantago-aquatica genome assembly, chromosome: 1.
OY856409.1:109813263-109813282
CTTCAAATTCATTAAGGCCACCTAGTTAAC109813263CCTAACATCAAATCCAACACAAAAGAAATATACCCTACTTGGTAGACCCA
Calendula officinalis genome assembly, chromosome: 3.
OY970822.1:28357053-28357072
GAACGATGATTGAATGGAAATCCTACCAGT28357053CCTAACATCAAATCCAACACTGAACGTAGGTCACACAGTTTCTGTAACTT
Erodium maritimum genome assembly, chromosome: 3.
OY997590.1:42320332-42320351
TTCTCACCCATCTTCCATAGCCTTCATCTT42320332CCTAACATCAAATCCAACACCACTTCCATAGTGCATCATCATTCTTCCAA
1_Tdi_b3v08.
OA568971.1:7664-7683
ACTCGGAAATCTGGTAAATACAAATAATAA7664CCTAACATCAAATCCAACACCCTAGCGACATCAAACAAGAAACATGGCAG
Lotus japonicus genomic DNA, chromosome 4, clone: LjT39E03, TM0266.
AP006392.1:38545-38564
GAATCGAAGGCACAGAGAGAGAGAGAGAGT38545GTGTTGGATTTGATGTTAGGGGAAACAAGAAGAAGAAGAAGAAGAAGAAG
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:79551350-79551369
CGAAGGCACAGAGAGAGAGAGAGAGAGAGT79551350GTGTTGGATTTGATGTTAGGGGAAACAAGAAGAAGAAGAAGAAGAAGAGG
Arabis alpina genome assembly, chromosome: 1.
LT669788.1:12297910-12297929
CAACACCAAAAAATGTGTAATACCATTTTG12297910GTGTTGGATTTGATGTTAGGTTGGAGAAAATTTTACACCAAAATGAGATT
Erodium maritimum genome assembly, chromosome: 1.
OY997588.1:51894923-51894942
TTGGAAGAATGATGATGCATTATGGAAGTG51894923GTGTTGGATTTGATGTTAGGAAGATGAATGTCACGCCCCAATTTCAGTAA
1_Tps_b3v08.
OD012560.1:4033-4052
CTGCCATGTTTCTTGTTTGATGTCGCTAGG4033GTGTTGGATTTGATGTTAGGTTATTATTTGTATTTACCAGATTTCCGAGT
Thymelicus lineola genome assembly, chromosome: 15.
OZ010695.1:7048004-7048023
GTGTAAAGACCTATTCCCCTGGCTCTAAAC7048004GTGTTGGATTTGATGTTAGGAATGCTTTGTTAGTGCTGCGTTAGATGTCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTAACATCAAATCCAACAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTAACATCAAATCCAACAC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.538 | 0.529 | search_plus_done; http://172.18.8.135:50400/match?q=CCTAACATCAAATCCAACAC&k=0&no_gap=0&offset=0&limit=50
0.661 | 0.123 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTTGGATTTGATGTTAGG&k=0&no_gap=0&offset=0&limit=36
0.665 | 0.004 | cgi_end;

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