GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:54:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB004G10F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB004G10, genomic survey sequence.
DX013252.1:85-105
TAGATAAGTGAAGCAAGTACATGTGGCAAT85CCTACACTTGCGATCTTCACCTTTCTCTCTCTCTCACACTCACTCTTAAAC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:12449758-12449778
TAGATAAGTGAAGCAAGTACATGTGGCAAT12449758CCTACACTTGCGATCTTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:25462988-25463008
TAGATAAGTGAAGCAAGTACATGTGGCAAT25462988CCTACACTTGCGATCTTCACCTCTCTTAGATCTCCCCTCCCTGTCTCTCTC
Brassica rapa subsp. chinensis clone D2 microsatellite sequence.
DQ407199.1:1-21
1CCTACACTTGCGATCTTCACCTTTCTCTCTCTCTCACACTCACTCTTAAAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_582.
FX727689.1:2150-2170
GTTTAAGAGTGAGTGTGAGAGAGAGAGAAA2150GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:8311883-8311903
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA8311883GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:39740759-39740779
GAGAGAGACAGGGAGGGGAGATCTAAGAGA39740759GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
Brassica rapa genome, scaffold: A10.
LR031577.1:5278753-5278773
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA5278753GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:38903498-38903518
GAGAGAGACAGGGAGGGGAGATCTAAGAGA38903498GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:8027208-8027228
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA8027208GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTACACTTGCGATCTTCACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTACACTTGCGATCTTCACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.134 | 0.125 | search_plus_done; http://172.18.8.135:50400/match?q=CCTACACTTGCGATCTTCACC&k=0&no_gap=0&offset=0&limit=50
0.189 | 0.056 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGAAGATCGCAAGTGTAGG&k=0&no_gap=0&offset=0&limit=46
0.193 | 0.004 | cgi_end;

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