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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:18:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST261249 tomato susceptible, Cornell Solanum lycopersicum cDNA clone cLES11J19, mRNA sequence.
AI780370.1:284-303
TCTGTGAGATCAAGGCTACAATATTTGGGG284CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
cC-esflcLEL30A23d1 Tomato flower library from a mixture of developmental stages Solanum lycopersicum cDNA clone cC-esflcLEL30A23d1, mRNA sequence.
BG629804.1:200-219
TCTGTGAGATCAAGGCTACAATATTTGGGG200CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
EST549552 tomato flower, 3 - 8 mm buds Solanum lycopersicum cDNA clone cTOB29N15 5' end, mRNA sequence.
BI929663.1:414-433
TCTGTGAGATCAAGGCTACAATATTTGGGG414CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
Solanum lycopersicum cDNA, clone: LEFL1093AG02, 5' end, expressed in leaf.
DB706972.1:475-494
TCTGTGAGATCAAGGCTACAATATTTGGGG475CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
Solanum lycopersicum cDNA, clone: LEFL2038M01, 5' end, expressed in fruit.
DB721763.1:447-466
TCTGTGAGATCAAGGCTACAATATTTGGGG447CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
Solanum lycopersicum cDNA, clone: LEFL3074B03, 5' end sequence in root.
FS191148.1:385-404
TCTGTGAGATCAAGGCTACAATATTTGGGG385CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
M82T1_05_O04_T7-ZL LA3475 Type I trichomes Solanum lycopersicum cDNA, mRNA sequence.
GT164019.1:432-451
TCTGTGAGATCAAGGCTACAATATTTGGGG432CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAACCACATGATTCATT
SLN_T3_141_B12_09JUN2005_094.1 SLN (leaves from Solanum tuberosum Shepody fertilized with nitrogen) Solanum tuberosum cDNA clone SLN_T3_141_B12_09JUN2005_094 5', mRNA sequence.
JG558657.1:405-424
TCTGTCAGATCAAGACTACAATATTTGGGG405CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACCATCGCACGATTCGCT
Solanum lycopersicum cDNA, clone: LEFL1093AG02, HTC in leaf.
AK325205.1:495-514
TCTGTGAGATCAAGGCTACAATATTTGGGG495CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
Solanum lycopersicum Micro-Tom DNA, chromosome 5, draft genome sequence.
AP028939.1:63899171-63899190
TCTGTGAGATCAAGGCTACAATATTTGGGG63899171CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
Solanum lycopersicum cultivar I-3 chromosome 5.
CP023761.1:60672417-60672436
TCTGTGAGATCAAGGCTACAATATTTGGGG60672417CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
Solanum verrucosum cultivar 11H23 chromosome 5.
CP133616.1:42290616-42290635
TCTGTGAGATCAAGACTACAATATTTGGGG42290616CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACCATTGAACGATTCGCT
Solanum lycopersicum chromosome ch05, complete genome.
HG975517.1:59819509-59819528
TCTGTGAGATCAAGGCTACAATATTTGGGG59819509CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
Solanum lycopersicum genome assembly, chromosome: 5.
OU640348.1:61542643-61542662
TCTGTGAGATCAAGGCTACAATATTTGGGG61542643CCTACTCCAGGGCTTCCTTCTCTAGATGAACAACAATCACATGATTCATT
Ischnura elegans genome assembly, chromosome: 2.
OV121101.1:100557991-100558010
GCGCAGGAGGCGGCCTCTCTGGTCGCCGGC100557991CCTACTCCAGGGCTTCCTTCTCCTCGCTCGCGTGGTCCCCATCGCAGGCC
EST261251 tomato susceptible, Cornell Solanum lycopersicum cDNA clone cLES11J19, mRNA sequence.
AI780372.1:328-347
AATGAATCATGTGATTGTTGTTCATCTAGA328GAAGGAAGCCCTGGAGTAGGCCCCAAATATTGTAGCCTTGATCTCACAGA
39235 Tomato HindIII BAC Library Solanum lycopersicum genomic clone LE_HBa0115J10 5, genomic survey sequence.
DU085432.1:684-703
AATGAATCATGTGATTGTTGTTCATCTAGA684GAAGGAAGCCCTGGAGTAGGCCCCAAATATTGTAGCCTTGATCTCACAGA
Solanum tuberosum cultivar P8 chromosome 5.
CP046690.1:45028329-45028348
AGYGAATCGTGCGATGGTTGTTCATCTAGA45028329GAAGGAAGCCCTGGAGTAGGCCCCAAATATTGTAGTCTTGATCTCACAGA
Solanum tuberosum cultivar MSH/14-112 chromosome 5.
CP046698.1:45023431-45023450
AGYGAATCGTKCGATGGTTGTTCATCTAGA45023431GAAGGAAGCCCTGGAGTAGGCCCCAAATATTGTAGTCTTGATCTCACAGA
Solanum pinnatisectum cultivar CGN17745 chromosome 5.
CP047565.1:45006133-45006152
AGTGAATCGTGCGATGGTTGTTCATCTAGA45006133GAAGGAAGCCCTGGAGTAGGCCCCAAATATTGTAGTCTTGATCTCACAGA
Solanum tuberosum cultivar Solyntus chromosome 5.
CP055238.1:51222537-51222556
AGCGAATCGTGCGATGGTTGTTCATCTAGA51222537GAAGGAAGCCCTGGAGTAGGCCCCAAATATTGTAGTCTTGATCTCACAGA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 6.
CP124714.1:152624602-152624621
AATGAATTGTTCGATGGTTGCTCATCTAGA152624602GAAGGAAGCCCTGGAGTAGGCCCCAAATATTGTAGTCTTGATCTCACAGA
Solanum dulcamara genome assembly, chromosome: 8.
OX359259.1:62079094-62079113
AATGAATCATTTGATGGTTGTTCATCTAGA62079094GAAGGAAGCCCTGGAGTAGGCCCCAAATATTGTAGTCTTGATATCACAGA
Nemoura dubitans genome assembly, chromosome: 3.
OV121076.1:22777323-22777342
GGGGGAAGCTTTGGCGGAGGCCCCGGAGGA22777323GAAGGAAGCCCTGGAGTAGGCCCCGGAGGAGGGGGAAGCCCCGCCGAGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTACTCCAGGGCTTCCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTACTCCAGGGCTTCCTTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.766 | 0.758 | search_plus_done; http://172.18.8.135:50400/match?q=CCTACTCCAGGGCTTCCTTC&k=0&no_gap=0&offset=0&limit=50
0.899 | 0.133 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGGAAGCCCTGGAGTAGG&k=0&no_gap=0&offset=0&limit=35
0.905 | 0.006 | cgi_end;

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