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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:20:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Homo sapiens DNA, chromosome 16, nearly complete genome.
AP023476.1:59048102-59048121
TCCTTTGAGTATCTTCTGCAAATAAAAGGC59048102CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAATGAAAACACCACTTTG
Homo sapiens isolate CHM13 chromosome 16.
CP068262.2:60449510-60449529
TCCTTTGAGTATCTTCTGCAAATAAAAGGC60449510CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAATGAAAACACCACTTTG
Homo sapiens isolate NA24385 chromosome 16.
CP139527.1:54740394-54740413
TCCTTTGAGTATCTTCTGCAAATAAAAGGC54740394CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAATGAAAACACCACTTTG
Homo sapiens isolate NA24385 chromosome 16.
CP139550.1:57956181-57956200
TCCTTTGAGTATCTTCTGCAAATAAAAGGC57956181CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAATGAAAACACCACTTTG
Onychomys torridus genome assembly, chromosome: 5.
LR877192.1:19521489-19521508
TCCTTTGACTATCTCCTGCAAATAAAAGGC19521489CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAGTGAAAACACCACTTTG
Acomys russatus genome assembly, chromosome: 26.
LR877237.1:18151502-18151521
TCCTTTGACTATCTCCCGCAAATAAAAGGC18151502CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAGTGAAAACACCACTTTG
Onychomys arenicola genome assembly, chromosome: 5.
OX460351.1:20209689-20209708
TCCTTTGACTATCTCCTGCAAATAAAAGGC20209689CCTATTCTTCAGCTTCCCCCAGCTTTATTCAGAGTGAAAACACCACTTTG
Onychomys leucogaster genome assembly, chromosome: 5.
OX460375.1:20031768-20031787
TCCTTTGACTATCTCCTGCAAATAAAAGGC20031768CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAGTGAAAACACCACTTTG
Peromyscus eremicus genome assembly, chromosome: 5.
OX460398.1:133422556-133422575
TCCTTTGACTATCTCCTGCAAATAAAAGGC133422556CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAGTGAAAACACCACTTTG
Onychomys leucogaster genome assembly, chromosome: 5.
OX460422.1:20535295-20535314
TCCTTTGACTATCTCCTGCAAATAAAAGGC20535295CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAGTGAAAACACCACTTTG
Onychomys arenicola genome assembly, chromosome: 5.
OX460446.1:20627003-20627022
TCCTTTGACTATCTCCTGCAAATAAAAGGC20627003CCTATTCTTCAGCTTCCCCCAGCTTTATTCAGAGTGAAAACACCACTTTG
Peromyscus eremicus genome assembly, chromosome: 5.
OX460470.1:135944142-135944161
TCCTTTGACTATCTCCTGCAAATAAAAGGC135944142CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAGTGAAAACACCACTTTG
Onychomys torridus genome assembly, chromosome: 5.
OX460886.1:19521489-19521508
TCCTTTGACTATCTCCTGCAAATAAAAGGC19521489CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAGTGAAAACACCACTTTG
Eukaryotic synthetic construct chromosome 16.
CP034494.1:54625392-54625411
TCCTTTGAGTATCTTCTGCAAATAAAAGGC54625392CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAATGAAAACACCACTTTG
Eukaryotic synthetic construct chromosome 16.
CP034519.1:54625392-54625411
TCCTTTGAGTATCTTCTGCAAATAAAAGGC54625392CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAATGAAAACACCACTTTG
TSA: Mustela putorius furo MPF81000056contig1/1 mRNA sequence.
JP004863.1:64-83
CTACCCCGGCCAGTCCATCCAGGAACTGCC64CCTATTCTTCAGCTTCCCCCCGCCGGGCGATGCCTGGGAGCTCGCCTATG
TSA: Musa acuminata AAA Group Unigene14899_B1 mRNA sequence.
JV360469.1:185-204
CCTCCTCTGCTACGTCCTCTGGCTTCGCCT185CCTATTCTTCAGCTTCCCCCTTGACTCCTCCTCCCCCGCGTCGTATTCCT
TSA: Musa acuminata AAA Group Unigene100205_NK1 mRNA sequence.
JV432519.1:193-212
CCTCCTCTGCTACGTCCTCTGGCTTCGCCT193CCTATTCTTCAGCTTCCCCCTTGACTCCTCCTCCCCCGCGTCGTATTCCT
Homo sapiens chromosome 16 clone RP11-508M7, WORKING DRAFT SEQUENCE, 11 unordered pieces.
AC025288.3:168773-168792
TCCTTTGAGTATCTTCTGCAAATAAAAGGC168773CCTATTCTTCAGCTTCCCCCAGCTTTATTCGGAATGAAAACACCACTTTG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A05.
HG996470.1:6815333-6815352
CCTCCTCTGCTACGTCCTCTGGCTTCGCCT6815333CCTATTCTTCAGCTTCCCCCTTGACTCCTCCTCCCCCGCGTCGTATTCCG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX590745.1:595183679-595183698
GACCAAGATCATCATCGGGCTCATATGATG595183679CCTATTCTTCAGCTTCCCCCATTATAGTACCATCATATTCGGGGAACCTA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX638879.1:581354027-581354046
GACCAAGATCATCATCGGGCTCATATGATG581354027CCTATTCTTCAGCTTCCCCCATTATAGTACCATCATATTCGGGGAACCTA
Porites lutea genome assembly, chromosome: 3.
OY283126.1:20075758-20075777
TCCAGCGTTCTGCCTACTGGACCTATTCCG20075758CCTATTCTTCAGCTTCCCCCCATCAGCTGTCCTCTCCTATTACCTTAGCA
Porites lutea genome assembly, chromosome: 6.
OY283129.1:30201709-30201728
TCCTGCGTTCTTCCTACTTGACCTATTCCG30201709CCTATTCTTCAGCTTCCCCCCATCAGCTGTCCTCTCCTATTACCTTAGCA
Homo sapiens chromosome 16 clone RP11-182C10, complete sequence.
AC007491.7:106329-106348
CAAAGTGGTGTTTTCATTCCGAATAAAGCT106329GGGGGAAGCTGAAGAATAGGGCCTTTTATTTGCAGAAGATACTCAAAGGA
Homo sapiens 3 BAC RP11-817M15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC112640.3:109439-109458
CAAAGTGGTGTTTTCATTCCGAATAAAGCT109439GGGGGAAGCTGAAGAATAGGGCCTTTTATTTGCAGAAGATACTCAAAGGA
Acomys kempi genome assembly, chromosome: 12.
OU015366.1:33197637-33197656
CAAAGTGGTGTTTTCACTCCGAATAAAGCT33197637GGGGGAAGCTGAAGAATAGGGCCTTTTATTTGCGGGAGATAGTCAAAGGA
Acomys dimidiatus genome assembly, chromosome: 11.
OU015384.1:32414957-32414976
CAAAGTGGTGTTTTCACTCCGAATAAAGCT32414957GGGGGAAGCTGAAGAATAGGGCCTTTTATTTGCGGGAGATAGTCAAAGGA
Apodemus sylvaticus genome assembly, chromosome: 21.
OX359318.1:38273835-38273854
CAAAGTGGTGTTTTCACTTCGAATAAAGCT38273835GGGGGAAGCTGAAGAATAGGGCCTTTTATTTGCAGGAGATAGTCAAAGGA
Musa troglodytarum cultivar karat chromosome 5.
CP097507.1:9321869-9321888
CGGAATACGAGGCGGAGGAGGAGGAGCCGA9321869GGGGGAAGCTGAAGAATAGGAGGCGAAGCCACAGGACGTAGCAGAGGAGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX460093.1:589239785-589239804
TAGGTTCCCCGAATATGATGGTACTATAAT589239785GGGGGAAGCTGAAGAATAGGCATCATATGAGCCCGATGATGATCTTGGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTATTCTTCAGCTTCCCCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTATTCTTCAGCTTCCCCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.225 | 0.216 | search_plus_done; http://172.18.8.135:50400/match?q=CCTATTCTTCAGCTTCCCCC&k=0&no_gap=0&offset=0&limit=50
0.348 | 0.123 | search_minus_done; http://172.18.8.135:50400/match?q=GGGGGAAGCTGAAGAATAGG&k=0&no_gap=0&offset=0&limit=26
0.353 | 0.005 | cgi_end;

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