GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 20:45:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sylvilagus floridanus genome assembly, chromosome: 4.
OX463226.1:25908197-25908216
AGTTCTCTGTTTATGTCTCCCTGCCTTCCC25908197CCTCCCTCCAAAAATGTCAAATGGCTGCCAAGTGGCCAGAGAGATCGCAA
Dianthus caryophyllus mRNA, clone: CES07F17, 5' end sequence.
FY384877.1:41-60
CACAAAACTCAAAACCCCTTCCCTCCCTTC41CCTCCCTCCAAAAATGTCAACAACCACCGTGGAAACCACCACCACCACCA
Dianthus caryophyllus mRNA, clone: CFES01B19, 5' end sequence.
FY394207.1:40-59
CACAAAACTCAAAACCCCTTCCCTCCCTTC40CCTCCCTCCAAAAATGTCAACAACCACCGTGGAAACCACCACCACCACCA
Dianthus caryophyllus mRNA, clone: CFES06M11, 5' end sequence.
FY396358.1:37-56
CACAAAACTCAAAACCCCTTCCCTCCCTTC37CCTCCCTCCAAAAATGTCAACAACCACCGTGGAAACCACCACCACCACCA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.589.C1.
FX297720.1:40-59
CACAAAACTCAAAACCCCTTCCCTCCCTTC40CCTCCCTCCAAAAATGTCAACAACCACCGTGGAAACCACCACCACCACCA
Sambucus nigra genome assembly, chromosome: 11.
OX422217.1:120272665-120272684
TTTGTCACCCGTCTTATCCAAATCCCCCAT120272665CCTCCCTCCAAAAATGTCAATTGGGGATGGTTCCTTTATTACACCTTACA
Rutpela maculata genome assembly, chromosome: 8.
OW386292.2:144637305-144637324
TTTCTGTATTGTAACGTTGTGTCTCGTTCT144637305CCTCCCTCCAAAAATGTCAACTGTTAACCTTTAAGAAGACAGCACTAGGA
Biomphalaria glabrata genome assembly, chromosome: 5.
OX365777.1:19141430-19141449
GAGTAAATGAAGTTGTTCTCATCAGTTTTA19141430CCTCCCTCCAAAAATGTCAATATTTTGGCATAGGGTTCACAAGCTCTACT
Parambassis ranga genome assembly, chromosome: 15.
LR131965.1:4796034-4796053
TATAGTTATTTGTTAGTTTAGCTCATTTTC4796034TTGACATTTTTGGAGGGAGGTAAATAAAAACCCACTTTTCAAGGGTAAAC
Electrona antarctica genome assembly, chromosome: 24.
OX578269.1:6613030-6613049
AGTTTGACATGTCAGGAAAGTTTCTCATTT6613030TTGACATTTTTGGAGGGAGGGCAGAATCCAAAAGAGCAGACCGGCCCGCC
Coleophora flavipennella genome assembly, chromosome: 34.
OX369286.1:3900280-3900299
GGCTTTTTGACTAGGCAGTGAGTTACGGTG3900280TTGACATTTTTGGAGGGAGGCCTTTGTTCAGCAGTGAACGTCTTTTGGCT
Ceriagrion tenellum genome assembly, chromosome: 1.
OY720632.1:117055525-117055544
TTGTGCCTCGAGAGGGCACAAGTTGTGCCA117055525TTGACATTTTTGGAGGGAGGGAGGAATTTTAAAATATATTTTAATAGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTCCCTCCAAAAATGTCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTCCCTCCAAAAATGTCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.292 | 0.283 | search_plus_done; http://172.18.8.135:50400/match?q=CCTCCCTCCAAAAATGTCAA&k=0&no_gap=0&offset=0&limit=50
0.322 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=TTGACATTTTTGGAGGGAGG&k=0&no_gap=0&offset=0&limit=42
0.324 | 0.003 | cgi_end;

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