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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 06:52:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CL__Eb0010C19.r CL__Eb Curcuma longa cDNA clone CL__Eb0010C19 3', mRNA sequence.
DY394753.1:282-301
CAGTGCTAGAAGGGTGCTTCCGCTTGTGCT282CCTCGCAGCCCTTGTAGTAGCCGTCGCCCCAGACAAGTAAGGAGGAGTCG
TSA: Costus pictus Locus_29210_Transcript_1/1.Copileaf mRNA sequence.
JW239428.1:263-282
CGGCAGGCACCGACTGCTTCCGTTTGTTTT263CCTCGCAGCCCTTGTAGTAGCCGTCCCCCCATCCAAGCAACGACGCCCCG
Spirodela polyrhiza strain 9509 chromosome 18, partial sequence.
CP019110.1:3442476-3442495
CCTGCGACGGCAGCATCTTCCTCTTGTCCT3442476CCTCGCAGCCCTTGTAGTAGCCGTCCCCCCACGCGAGGAGGGAGGCGCCA
Musa troglodytarum cultivar karat chromosome 10.
CP097503.1:19073669-19073688
TGCTCGCGGCCCGTTGCTTCCGCTTGTCCT19073669CCTCGCAGCCCTTGTAGTAGCCGTCGCCCCACCCGAGGAAGGACGTCCCG
Musa acuminata subsp. malaccensis isolate AA chromosome 11.
CP126380.1:32381539-32381558
TGCTCGCGGCCCGTTGCTTCCGCTTGTCCT32381539CCTCGCAGCCCTTGTAGTAGCCGTCGCCCCACCCGAGGAAGGACGTCCCG
Musa acuminata subsp. malaccensis isolate AA chromosome 22.
CP126391.1:31810552-31810571
TGCTCGCGGCCCGTTGCTTCCGCTTGTCCT31810552CCTCGCAGCCCTTGTAGTAGCCGTCGCCCCACCCGAGGAAGGACGTCCCG
Canna indica chromosome 2.
CP136891.1:66832065-66832084
CGCCTCCGGACGGCCCCTTCCGCTTGTCCT66832065CCTCGCAGCCCTTGTAGTAGCCGTCGCCCCAGCTGAGAACGGGGGCGGCG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A11.
HG996475.1:32220385-32220404
TGCTCGCGGCCCGTTGCTTCCGCTTGTCCT32220385CCTCGCAGCCCTTGTAGTAGCCGTCGCCCCACCCGAGGAAGGACGTCCCG
Musa schizocarpa genome assembly, chromosome: S11.
LS990925.1:34331837-34331856
TGCTCGCGGCCCGTTGCTTCCGCTTGTCCT34331837CCTCGCAGCCCTTGTAGTAGCCGTCGCCCCACCCGAGGAAGGACGTCCCG
Acanthosoma haemorrhoidale genome assembly, chromosome: X.
OV884009.1:10808449-10808468
GTTCGTTCCTGGACTTCAGGATTCTATAAG10808449CCTCGCAGCCCTTGTAGTAGGCCCGTATTCTCCAAATACTTTTTAATGGC
Acanthosoma haemorrhoidale genome assembly, chromosome: 2.
OV884012.1:105287473-105287492
GCGTGGTTCTTGACTTCAGCGTTGTGTAAG105287473CCTCGCAGCCCTTGTAGTAGGAGTAGGCCGGATGGCCTTGCTTGCAAAGT
CL__Eb0010C19.f CL__Eb Curcuma longa cDNA clone CL__Eb0010C19 5', mRNA sequence.
DY394752.1:223-242
CGACTCCTCCTTACTTGTCTGGGGCGACGG223CTACTACAAGGGCTGCGAGGAGCACAAGCGGAAGCACCCTTCTAGCACTG
TSA: Oncidium Gower Ramsey contig13756.OnGoRa mRNA sequence.
JL914765.1:150-169
CGGCGCTTCCATTCTCGGCTGGGGCGACGG150CTACTACAAGGGCTGCGAGGAGGAAAAGCGGGGGCGGAGGAACGCCACGT
TSA: Musa acuminata AAA Group Unigene17698_B1 mRNA sequence.
JV363410.1:323-342
CGGGACGTCCTTCCTCGGGTGGGGCGACGG323CTACTACAAGGGCTGCGAGGAGGACAAGCGGAAGCAACGGGCCGCGAGCA
TSA: Musa acuminata AAA Group Unigene83927_NK1 mRNA sequence.
JV444204.1:248-267
CGGGACGTCCTTCCTCGGGTGGGGCGACGG248CTACTACAAGGGCTGCGAGGAGGACAAGCGGAAGCAACGGGCCGCGAGCA
TSA: Curcuma longa Locus_15191_Transcript_1/2_Confidence_1.000_Length_1687_C mRNA sequence.
JW780177.1:357-376
CGACTCCTCCTTACTTGTCTGGGGCGACGG357CTACTACAAGGGCTGCGAGGAGCACAAGCGGAAGCACCCTTCTAGCACTG
Seq_ct_1494 MAMB Musa acuminata subsp. malaccensis genomic, genomic survey sequence.
HN239751.1:187-206
CGGGACGTCCTTCCTCGGGTGGGGCGACGG187CTACTACAAGGGCTGCGAGGAGGACAAGCGGAAGCAACGGGCCGCGAGCA
Cymbidium goeringii transcription factor MYC2-like isoform X4 mRNA, complete cds.
MK302385.1:472-491
CGGCGCTTCCATTCTTGGCTGGGGCGACGG472CTACTACAAGGGCTGCGAGGAGGACAAGCGGAGGCGGAGGAACGACCCGT
Cymbidium ensifolium clone ZHLZ.comp49930_c0_seq1 transcription factor MYC2-like isoform X2 mRNA, complete cds.
MK303681.1:421-440
CGGCGCTTCCATTCTTGGCTGGGGCGACGG421CTACTACAAGGGCTGCGAGGAGGACAAGCGGAGGCGGAGGAACGCCCCGT
Cymbidium sinense transcription factor MYC2-like isoform X2 mRNA, complete cds.
MK307546.1:451-470
CGGCGCTTCCATTCTTGGCTGGGGCGACGG451CTACTACAAGGGCTGCGAGGAGGACAAGCGGAGGCGGAGGAACGCCCCGT
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 2.
CP125974.1:468496778-468496797
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG468496778CTACTACAAGGGCTGCGAGGAGGCCGACAAGCGCAGGCAGCCGGCCTCCG
Canna indica chromosome 6.
CP136895.1:567461-567480
CGGGACTTCGCTTCTTGGCTGGGGGGACGG567461CTACTACAAGGGCTGCGAGGAGAACAAGCGGAAGCAGCGGGGCGCGACTG
Spirodela intermedia genome assembly, chromosome: 18.
LR743605.1:3586988-3587007
ATGGCGCCTCCTTCCTCGCGTGGGGGACGG3586988CTACTACAAGGGCTGCGAGGAGGACAAGAGGAAGATGCTGCCGTCGCCGG
Musa acuminata AAA Group MYC9 mRNA, complete cds.
ON981390.1:324-343
CGGGACGTCCTTCCTCGGGTGGGGCGACGG324CTACTACAAGGGCTGCGAGGAGGACAAGCGGAAGCAACGGGCCGCGAGCA
Avena insularis genome assembly, chromosome: 1C.
OU342338.1:342193017-342193036
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG342193017CTACTACAAGGGCTGCGAGGAGGCGGACAAGCGCAGGCAGCAGACCACCC
Avena insularis genome assembly, chromosome: 1D.
OU342345.1:259302620-259302639
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG259302620CTACTACAAGGGCTGCGAGGAGGCCGACAAGCGCAGGCAGCCGGCCTCCG
Avena sativa genome assembly, chromosome: 1A.
OU342378.1:279205502-279205521
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG279205502CTACTACAAGGGCTGCGAGGAGGCCGACAAGCGCAGGCAGCCGGCCTCCG
Avena sativa genome assembly, chromosome: 1C.
OU342385.1:387824787-387824806
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG387824787CTACTACAAGGGCTGCGAGGAGGCGGACAAGCGCAGGCAGCAGACCACCC
Avena sativa genome assembly, chromosome: 1D.
OU342392.1:259875640-259875659
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG259875640CTACTACAAGGGCTGCGAGGAGGCCGACAAGCGCAGGCAGCCGGCCTCCG
Avena atlantica genome assembly, chromosome: 1A.
OU342733.1:379166444-379166463
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG379166444CTACTACAAGGGCTGCGAGGAGGCCGACAAGCGCAGGCAGCCGGCCTCCG
Avena eriantha genome assembly, chromosome: 1C.
OU342740.1:306419997-306420016
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG306419997CTACTACAAGGGCTGCGAGGAGGCCGACAAGCGCAGGCAGCAGACCACCC
Avena longiglumis genome assembly, chromosome: 1A.
OU342747.1:383554702-383554721
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG383554702CTACTACAAGGGCTGCGAGGAGGCCGACAAGCGCAGGCAGCCGGCCTCCG
Avena sativa genome assembly, chromosome: 1.
OV702279.1:278509767-278509786
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG278509767CTACTACAAGGGCTGCGAGGAGGCCGACAAGCGCAGGCAGCCGGCCTCCG
Avena sativa genome assembly, chromosome: 8.
OV702286.1:425238707-425238726
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG425238707CTACTACAAGGGCTGCGAGGAGGCGGACAAGCGCAGGCAGCAGACCACCC
Avena sativa genome assembly, chromosome: 15.
OV702293.1:270697219-270697238
CGGCGCCTCCCTCCTCGGCTGGGGCGACGG270697219CTACTACAAGGGCTGCGAGGAGGCCGACAAGCGCAGGCAGCCGGCCTCCG
Acanthosoma haemorrhoidale genome assembly, chromosome: 1.
OV884011.1:80389754-80389773
ATGCGTGCTCTGCTAGCAAGGCCATCCGGC80389754CTACTACAAGGGCTGCGAGGCTTACAGAACGCTGAAGTCGAGGAGCGAAC

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