GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:28:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

NXSI_142_H10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_142_H10 5' similar to Arabidopsis thaliana sequence At1g17370 oligouridylate binding protein, putative see http://mips.gs
BG275360.1:282-300
TTGAACATGAGCCAGGCAGGAGGAGGCCAG282CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
NXLV_078_F08_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_078_F08 5' similar to Arabidopsis thaliana sequence At1g17370 oligouridylate binding protein, putative see http://mips.gs
BM903049.1:399-417
TTGAACATGAGCCAGGCAGGAGGAGGNNAG399CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDR1_11_C08.b1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_11_C08_A015 3', mRNA sequence.
CF387187.1:157-175
TTGAACATGAGCCAGGCAGGAGGAGGCCAG157CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDR1_11_C08.g1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_11_C08_A015 5', mRNA sequence.
CF387218.1:126-144
TTGAACATGAGCCAGGCAGGAGGAGGCCAG126CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDR2_20_E01.b1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_20_E01_A021 3', mRNA sequence.
CF390563.1:245-263
TTGAACATGAGCCAGGCAGGAGGAGGCCAG245CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDR2_20_G01.g1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_20_G01_A021 5', mRNA sequence.
CF390653.1:525-543
TTGAACATGAGCCAGGCAGGAGGAGGCCAG525CCTCTATTGCCATTATCTGCTCAGCAAAGGATTGGGACTGGGCCTTGGA
RTDR3_5_H02.b1_A022 Loblolly pine roots recovering from drought DR3 Pinus taeda cDNA clone RTDR3_5_H02_A022 3', mRNA sequence.
CF392599.1:146-164
TTGAACATGAGCCAGGCAGGAGGAGGCCAG146CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDS3_24_H11.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus taeda cDNA clone RTDS3_24_H11_A022 3', mRNA sequence.
CF398210.1:117-135
TTGAACATGAGCCAGGCAGGAGGAGGCCAG117CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDS1_17_F09.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_17_F09_A015 3', mRNA sequence.
CF470392.1:102-120
TTGAACATGAGCCAGGCAGGAGGAGGCCAG102CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDS1_17_F09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_17_F09_A015 5', mRNA sequence.
CF470468.1:686-704
TTGAACATGAGCCAGGCAGGAGGAGGCCAG686CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDS1_12_B09.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_12_B09_A015 3', mRNA sequence.
CF472810.1:304-322
TTGAACATGAGCCAGGCAGGAGGAGGCCAG304CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTWW2_18_D08.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_18_D08_A021 5', mRNA sequence.
CF474127.1:455-473
TTGAACATGAGCCAGGCAGGAGGAGGCCAG455CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTWW2_17_C03.b1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_17_C03_A021 3', mRNA sequence.
CF474181.1:107-125
TTGAACATGAGCCAGGCAGGAGGAGGCCAG107CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGGCCTTGGAC
RTWW2_17_C03.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_17_C03_A021 5', mRNA sequence.
CF474229.1:553-571
TTGAACATGAGCCAGGCAGGAGGAGGCCAG553CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGGCCTTGGAC
RTWW2_8_B07.b1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_8_B07_A021 3', mRNA sequence.
CF474850.1:224-242
TTGAACATGAGCCAGGCAGGAGGAGGCCAG224CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTWW2_8_B07.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_8_B07_A021 5', mRNA sequence.
CF474925.1:624-642
TTGAACATGAGCCAGGCAGGAGGAGGCCAG624CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTWW3_20_F03.b1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_20_F03_A022 3', mRNA sequence.
CF478479.1:121-139
TTGAACATGAGCCAGGCAGGAGGAGGCCAG121CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTCNT1_28_A11.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_28_A11_A029 3', mRNA sequence.
CF667065.1:353-371
TTGAACATGAGCCAGGCAGGAGGAGGCCAG353CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGGCCTTGGAC
RTCNT1_28_A11.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_28_A11_A029 5', mRNA sequence.
CF667149.1:485-503
TTGAACATGAGCCAGGCAGGAGGAGGCCAG485CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGGCCTTGGAC
RTCNT1_38_D03.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_38_D03_A029 3', mRNA sequence.
CF668699.1:106-124
TTGAACATGAGCCAGGCAGGAGGAGGCCAG106CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGCCCTTGGAC
RTCNT1_48_E01.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_48_E01_A029 3', mRNA sequence.
CF670113.1:142-160
TTGAACATGAGCCAGGCAGGAGGAGGCCAG142CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
24RDBNH_UP_007_G04_19DEC2003_020 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN730379.1:522-540
AGATAGCTTTTGTAGATGAAGGTTTCTTAA522CCTCTATTGCCATTATCTGGATCAACATCACTATTGTATTACAACTTTC
EST783505 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIAAQ89 5' end, mRNA sequence.
CN784814.1:793-811
TTGAACATGAGCCAGGCAGGAGGAGGCCAG793CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGGCCTTGGAC
EST783972 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIAAW93 5' end, mRNA sequence.
CN785281.1:796-814
TTGAACATGAGCCAGGCAGGAGGAGGCCAG796CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
FLD1_6_G11.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_6_G11_A029 3', mRNA sequence.
CO158350.1:115-133
TTGAACATGAGCCAGGCAGGAGGAGGCCAG115CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
FLD1_26_B05.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_26_B05_A029 3', mRNA sequence.
CO161002.1:520-538
TTGAACATGAGCCAGGCAGGAGGAGGCCAG520CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
FLD1_26_B05.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_26_B05_A029 5', mRNA sequence.
CO161073.1:610-628
TTGAACATGAGCCAGGCAGGAGGAGGCCAG610CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
NDL1_39_A09.b1_A029 Needles control Pinus taeda cDNA clone NDL1_39_A09_A029 3', mRNA sequence.
CO173752.1:322-340
TTGAACATGAGCCAGGCAGGAGGAGGCCAG322CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
Pinus pinaster bud EST.
CT577714.1:309-327
TTGAACATGAGCCAGGCAGGAGGAGGTCAG309CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
EST846050 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PICCG20 5' end, mRNA sequence.
CV134841.1:353-371
TTGAACATGAGCCAGGCAGGAGGAGGCCAG353CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTPQ1_23_E09.b1_A032 Roots treated with paraquat Pinus taeda cDNA clone RTPQ1_23_E09_A032 3', mRNA sequence.
CX714524.1:314-332
TTGAACATGAGCCAGGCAGGAGGAGGCCAG314CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTPQ1_40_B02.g1_A032 Roots treated with paraquat Pinus taeda cDNA clone RTPQ1_40_B02_A032 5', mRNA sequence.
CX716084.1:450-468
TTGAACATGAGCCAGGCAGGAGGAGGCCAG450CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
Brassica oleracea var. viridis mRNA, clone: KALE-027G18, 3' end sequence.
DK525648.1:798-816
GAATAGCTTTTGTAGATGAAGGTTTCTTAA798CCTCTATTGCCATTATCTGGATCAACATCACTATGGATTATTGTTGTAC
Brassica oleracea var. viridis mRNA, clone: KALE-098O20, 3' end sequence.
DK552964.1:665-683
GAATAGCTTTTGTAGATGAAGGTTTCTTAA665CCTCTATTGCCATTATCTGGATCAACATCACTATGGATTATTGTTGTAT
Brassica oleracea var. viridis mRNA, clone: KALE-125P23, 3' end sequence.
DK563296.1:585-603
GAATAGCTTTTGTAGATGAAGGTTTCTTAA585CCTCTATTGCCATTATCTGGATCAACATCACTATGGATTATTGTTGTAT
Brassica oleracea var. viridis mRNA, clone: KALE-131F20, 3' end sequence.
DK565348.1:661-679
GAATAGCTTTTGTAGATGAAGGTTTCTTAA661CCTCTATTGCCATTATCTGGATCAACATCACTATGGATTATTGTTGTAT
EST945055 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPICF50 5' end, mRNA sequence.
DN449256.1:148-166
TTGAACATGAGCCAGGCAGGAGGAGGCCAG148CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGGCCTTGGAC
EST945064 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPICF61 5' end, mRNA sequence.
DN449265.1:148-166
TTGAACATGAGCCAGGCAGGAGGAGGCCAG148CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGGCCTTGGAC
EST954211 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIHB64 5' end, mRNA sequence.
DN458412.1:519-537
TTGAACATGAGCCAGGCAGGAGGAGGCCAG519CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGGCCTTGGAC
HEAT1_8_H05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_8_H05_A029 3', mRNA sequence.
DR011863.1:384-402
TTGAACATGAGCCAGGCAGGAGGAGGCCAG384CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
HEAT1_21_H02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_21_H02_A029 3', mRNA sequence.
DR013762.1:311-329
TTGAACATGAGCCAGGCAGGAGGAGGCCAG311CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
STRS1_28_E02.b2_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_28_E02_A034 3', mRNA sequence.
DR019158.1:105-123
TTGAACATGAGCCAGGCAGGAGGAGGCCAG105CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
STRS1_28_E02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_28_E02_A034 5', mRNA sequence.
DR019240.1:551-569
TTGAACATGAGCCAGGCAGGAGGAGGCCAG551CCTCTATTGCCATTATCTGCTCATCAAGGATTGGGACTGGGCCTTGGAC
STRS1_40_G09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_40_G09_A034 3', mRNA sequence.
DR020944.1:496-514
TTGAACATGAGCCAGGCAGGAGGAGGCCAG496CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGGCCTTGGAC
STRS1_49_A11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_49_A11_A034 3', mRNA sequence.
DR022119.1:169-187
TTGAACATGAGCCAGGCAGGAGGAGGCCAG169CCTCTATTGCCATTATCTGCTCAGCAAGGCTTGGGACTGGGCCTTGGAC
RTDK1_16_C03.b1_A029 Roots, dark Pinus taeda cDNA clone RTDK1_16_C03_A029 3', mRNA sequence.
DR070859.1:352-370
TTGAACATGAGCCAGGCAGGAGGAGGCCAG352CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTDK1_17_C06.b1_A029 Roots, dark Pinus taeda cDNA clone RTDK1_17_C06_A029 3', mRNA sequence.
DR071015.1:454-472
TTGAACATGAGCCAGGCAGGAGGAGGCCAG454CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTAL1_17_D05.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone RTAL1_17_D05_A029 3', mRNA sequence.
DR090749.1:245-263
TTGAACATGAGCCAGGCAGGAGGAGGCCAG245CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
RTAL1_17_D05.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone RTAL1_17_D05_A029 5', mRNA sequence.
DR090828.1:330-348
TTGAACATGAGCCAGGCAGGAGGAGGCCAG330CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
STRR1_6_B06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_6_B06_A033 3', mRNA sequence.
DR093098.1:401-419
TTGAACATGAGCCAGGCAGGAGGAGGCCAG401CCTCTATTGCCATTATCTGCTCAGCAAGGATTGGGACTGGGCCTTGGAC
estPmaLU_SB12 Picea mariana cDNA libraries Picea mariana STS cDNA, sequence tagged site.
BV729051.1:336-354
TTGAACATGAGCCAGGCAGGAGCAGGCCAG336CCTCTATTGCCATTATCTGCTCAGCAAGGAATGGGACTGGGTCTTGGAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH040N18, complete sequence.
AC241128.1:32342-32360
AGATAGCTTTTGTAGATGAAGGTTTCTTAA32342CCTCTATTGCCATTATCTGGATCAACATCACTATTGTATTACAACTTTC
Picea mariana putative RNA-binding protein (Sb12) mRNA, partial cds.
AF051208.1:336-354
TTGAACATGAGCCAGGCAGGAGCAGGCCAG336CCTCTATTGCCATTATCTGCTCAGCAAGGAATGGGACTGGGTCTTGGAC
Picea glauca clone GQ04008_J11 mRNA sequence.
BT118651.1:1432-1450
TTGAACATGAGCCAGGCAGGAGCAGGCCAG1432CCTCTATTGCCATTATCTGCTCAGCAAGGAATGGGACTGGGTCTTGGAC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:48712275-48712293
GAATAGCTTTTGTAGATGAAGGTTTCTTAA48712275CCTCTATTGCCATTATCTGGATCAACATCACTATGGATTATTGTTGTAT
Picea sitchensis clone WS0285_N15 unknown mRNA.
EF678228.1:1426-1444
TTGAACATGAGCCAGGCAGGAGCAGGCCAG1426CCTCTATTGCCATTATCTGCTCAGCAAGGAATGGGACTGGGTCTTGGAC
Hedera helix genome assembly, chromosome: 1.
OX359264.1:40112990-40113008
TCCCTTAAGCTCCGATTTTACCGTTTCAAC40112990CCTCTATTGCCATTATCTGCAAAATAAACATAAAAACAAGTAAGGTAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTCTATTGCCATTATCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTCTATTGCCATTATCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.976 | 2.968 | search_plus_done; http://172.18.8.135:50400/match?q=CCTCTATTGCCATTATCTG&k=0&no_gap=0&offset=0&limit=50
3.124 | 0.147 | search_minus_done; http://172.18.8.135:50400/match?q=CAGATAATGGCAATAGAGG&k=0&no_gap=0&offset=0&limit=0
3.124 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).