GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:24:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

UCRPT02_72F10_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-72F10-K19-5.b, mRNA sequence.
CX644239.1:772-791
CTTCCTTGTCTGCCAACTTGGAAAACAAAG772CCTCTCTGGCTTCTGGATTGTTAAATGGGGA
Citrus sinensis genome assembly, chromosome: 5.
OY754322.1:1627621-1627640
CTTCCTTGTCTGCCAACTTGGAAAACAGAG1627621CCTCTCTGGCTTCTGGATTGTTAAATGGGGAAGAAGATAAAGACGAAGAA
UCRPT02_72F10_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-72F10-K19-6.g, mRNA sequence.
CX644240.1:88-107
TTCTTCGTCTTTATCTTCTTCCCCATTTAA88CAATCCAGAAGCCAGAGAGGCTCTGTTTTCCAAGTTGGCAGACAAGGAAG
IC0AAA29BF03RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY271447.1:94-113
TTCTTCGTCTTTATCTTCTTCCCCATTTAA94CAATCCAGAAGCCAGAGAGGCTCTGTTTTCCAAGTTGGCAGACAAGGAAG
CM30-C1-401-086-F06-CT.F Sweet lime leaf, infected with CiLV Citrus limettioides cDNA, mRNA sequence.
EY865992.1:105-124
GTCTTCGTCTCTGTCTTCTTCCCCATTTAA105CAATCCAGAAGCCAGAGAGGCTCTGTTTTCCAAGTTGCCAGACAAGGAAG
CM30-C1-401-101-E09-CT.F Sweet lime leaf, infected with CiLV Citrus limettioides cDNA, mRNA sequence.
EY866405.1:94-113
GTCTTCGTCTCTGTCTTCTTCCCCATTTAA94CAATCCAGAAGCCAGAGAGGCTCTGTTTTCCAAGTTGGCAGACAAGGAAG
LT33-C1-003-057-C03-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY881573.1:110-129
TTCTTCGTCTTTATCTTCTTCCCCATTTAA110CAATCCAGAAGCCAGAGAGGCTCTGTTTTCCAAGTTGGCAGACAAGGAAG
LT33-C1-003-082-C08-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY883241.1:98-117
TTCTTCGTCTTTATCTTCTTCCCCATTTAA98CAATCCAGAAGCCAGAGAGGCTCTGTTTTCCAAGTTGGCAGACAAGGAAG
IC0AAA29BF03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29BF03, mRNA sequence.
FC913514.1:94-113
TTCTTCGTCTTTATCTTCTTCCCCATTTAA94CAATCCAGAAGCCAGAGAGGCTCTGTTTTCCAAGTTGGCAGACAAGGAAG
TSA: Hynobius retardatus mRNA, contig: comp159790_c0_seq1.
LE096386.1:1273-1292
CACTCAGGCTTTTGACATCGGCACACTGCG1273CAATCCAGAAGCCAGAGAGGATAGCAAAGCAAGAAGAGACATTATCCCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTCTCTGGCTTCTGGATTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTCTCTGGCTTCTGGATTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.274 | 0.265 | search_plus_done; http://172.18.8.135:50400/match?q=CCTCTCTGGCTTCTGGATTG&k=0&no_gap=0&offset=0&limit=50
0.970 | 0.696 | search_minus_done; http://172.18.8.135:50400/match?q=CAATCCAGAAGCCAGAGAGG&k=0&no_gap=0&offset=0&limit=48
0.975 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).