GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Onychomys arenicola genome assembly, chromosome: X.
OX460370.1:151917276-151917295

CCAGTTACAGTCTTTAAGGCAATGTCTGGC151917276CCTCTTACCTGAAACCCACCACTCCACTCTTGGAGCTGGATTCCTACTGT

Onychomys leucogaster genome assembly, chromosome: X.
OX460441.1:123463784-123463803

CCAGTTACAGTCTTTAAGGCAATGTCTGGC123463784CCTCTTACCTGAAACCCACCACTGCACCCTTGGAGCTGGATTCCTACTGT

Onychomys arenicola genome assembly, chromosome: X.
OX460465.1:143326783-143326802

CCAGTTACAGTCTTTAAGGCAATGTCTGGC143326783CCTCTTACCTGAAACCCACCACTCCACTCTTGGAGCTGGATTCCTACTGT

TSA: Pyrus communis mRNA, contig: lc19034.
FX627566.1:351-370

TTTCTTCAGTCTTTGGTTACCCACCGACGG351CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCGCC

Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:26355902-26355921

TTTCATCAGTCTTTGGTTACCCACCGACGG26355902CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC

Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:24240627-24240646

TTTCTTCAGTCTTTGGTTACCCACCGACGG24240627CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC

Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:25713745-25713764

TTTCTTCAGTCTCTGGTTACCCACCGACGG25713745CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC

Malus domestica genome assembly, chromosome: 5.
OU696681.1:25043595-25043614

TTTCTTCAGTCTTTGGTCACCCACCGACGG25043595CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCGCC

Malus domestica genome assembly, chromosome: 5.
OU744546.1:25652423-25652442

TTTCATCAGTCTTTGGTTACCCACCGACGG25652423CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC

Malus domestica genome assembly, chromosome: 5.
OU744957.1:25812665-25812684

TTTCATCAGTCTTTGGTTACCCACCGACGG25812665CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCACC

Malus domestica genome assembly, chromosome: 5.
OU744995.1:26911632-26911651

TTTCTTCAGTCTTTGGTCACCCACCGACGG26911632CCTCTTACCTGAAACCCACCATAACTCTGATCACTACTGCTCTCTCCGCC

Myotis daubentonii genome assembly, chromosome: 15.
OY725374.1:57622684-57622703

TGGGCGACTGCGTAGGAGAGAAGGGGAGGA57622684GGTGGGTTTCAGGTAAGAGGACCATACCTGTGTCTGGATGTTTTTCTTTG

TSA: Pyrus pyrifolia mRNA, contig: contig_21582.
FX401684.1:423-442

GGGGGAGAGAGCAGTAGTGATCAGAGTTAT423GGTGGGTTTCAGGTAAGAGGCCGTCGGTGGGTAACCAAAGACTGAAGAAA

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:19661522-19661541

GGCGGAGAGAGCAGTAGTGATCAGAGTTAT19661522GGTGGGTTTCAGGTAAGAGGCCGTCGGTGGGTGACCAAAGACTGAAGAAA

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:20463019-20463038

GGTGGAGAGAGCAGTAGTGATCAGAGTTAT20463019GGTGGGTTTCAGGTAAGAGGCTGTCGGTGGGTAACCAGAGACTGAACAAA

Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:19384776-19384795

GGCGGAGAGAGCAGTAGTGATCAGAGTTAT19384776GGTGGGTTTCAGGTAAGAGGCCGTCGGTGGGTAACCAAAGACTGAAGAAA

Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:20722443-20722462

GGTGGAGAGAGCAGTAGTGATCAGAGTTAT20722443GGTGGGTTTCAGGTAAGAGGCTGTCGGTGGGTAACCAGAGACTGAACAAA

Malus x robusta genome assembly, chromosome: 2.
OY720326.1:20653712-20653731

GGCGGAGAGAGCAGTAGTGATCAGAGTTAT20653712GGTGGGTTTCAGGTAAGAGGCCATCGGTGGGTAACCAAAGACTGAAGAAA

Pyrus communis genome assembly, chromosome: 2.
OY757069.1:15719395-15719414

GGCGGAGAGAGCAGTAGTGATCAGAGTTAT15719395GGTGGGTTTCAGGTAAGAGGCCGTCGGTGGGTAACCAAAGACTGAAGAAA

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Debug Info:

0.009 | 0.009 | search_start;
0.188 | 0.180 | search_plus_done; http://172.18.8.135:50400/match?q=CCTCTTACCTGAAACCCACC&k=0&no_gap=0&offset=0&limit=50
0.231 | 0.043 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGGGTTTCAGGTAAGAGG&k=0&no_gap=0&offset=0&limit=38
0.237 | 0.005 | cgi_end;

Summary:

Results:

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