GGGenome | Results

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2025-04-08 14:30:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:647600-647619

CATCTCCAAGTCGTTTAATGCACCAAAGAT647600CCTCTTGGCACGATAACACTTTCCAGTGTGGTATCCCTCGCTGCAGCGGC

Brassica napus genome assembly, chromosome: A01.
HG994355.1:616861-616880

CATCTCCAAGTCGTTTAATGCACCAAAGAT616861CCTCTTGGCACGATAACACTTTCCAGTGTGGTATCCCTCGCTGCAGCGGC

Brassica rapa genome, scaffold: A01.
LR031571.1:637787-637806

CATCTCCAAGTCGTTTAATGCACCAAAGAT637787CCTCTTGGCACGATAACACTTTCCAGTGTGGTATCCCTCGCTGCAGCGGC

Brassica rapa genome assembly, chromosome: A01.
LS974617.2:637576-637595

CATCTCCAAGTCGTTTAATGCACCAAAGAT637576CCTCTTGGCACGATAACACTTTCCAGTGTGGTATCCCTCGCTGCAGCGGC

BR034536 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-052E11 5', mRNA sequence.
EX049892.1:642-661

GCCGCTGCAGCGAGGGATACCACACTGGAA642AGTGTTATCGTGCCAAGAGGATCTTTGGTGCATTAAACGACTTGGAGATG

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006J12, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC189204.2:125248-125267

GCCGCTGCAGCGAGGGATACCACACTGGAA125248AGTGTTATCGTGCCAAGAGGATCTTTGGTGCATTAAACGACTTGGAGATG

Brassica napus partial HLS1 gene for putative N-acetyltransferase hookless1, exons 1-3.
AJ251988.1:1459-1478

GCCGCTGCAGCGAGGGATACCACACTGGAA1459AGTGTTATCGTGCCAAGAGGATCTTTGGTGCATTAAACGACTTGGAGATG

Rutpela maculata genome assembly, chromosome: 2.
OW386286.2:222596123-222596142

AATGGTCTGTATTTAATCGCCTATAAACCG222596123AGTGTTATCGTGCCAAGAGGCCTACGAAACTGAAAATAGTTATCTCGATA

Acrobasis suavella genome assembly, chromosome: 14.
OW971942.1:10582612-10582631

AAAATAATTTACTCTAGAAAATTGTGACCA10582612AGTGTTATCGTGCCAAGAGGCTGGCCGCATTTCCGCGTTACATCGTTATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.106 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=CCTCTTGGCACGATAACACT&k=0&no_gap=0&offset=0&limit=50
0.202 | 0.095 | search_minus_done; http://172.18.8.135:50400/match?q=AGTGTTATCGTGCCAAGAGG&k=0&no_gap=0&offset=0&limit=46
0.205 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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