GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:08:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 88 from Patent WO2006075084.
CS359749.1:2458-2482
GGATTTGCTTTTCTAACCCATCATGCCTCT2458CCTGCCACATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCCGTCGACCCGGGC
Sequence 95 from Patent WO2006075084.
CS359756.1:1448-1472
GGGGTTCCTGTAGTCACGGGGTCTTTGTTG1448CCTGCCACATTTAGTGAGGGTTAATAATCACTAGTGAATTCGCGGCCGCGTCGAC
Sequence 96 from Patent WO2006075084.
CS359757.1:1405-1429
AGGGAAGATCACCTTAAGGTTTCCATCATT1405CCTGCCACATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCCGTCGACCCGGGC
Sequence 97 from Patent WO2006075084.
CS359758.1:1712-1736
AAATGAGAGAAGTCCAAACCTCAATAGAAG1712CCTGCCACATTTAGTGAGGGTTAATAATCACTAGTGAATTCGCGGCCGCGTCGAC
Sequence 98 from Patent WO2006075084.
CS359759.1:1487-1511
GGGAGTTCAGTTGGCTCGGGGTTGCCTTGG1487CCTGCCACATTTAGTGAGGGTTAATAATCACTAGTGAATTCGCGGCCGCGTCGAC
Sequence 100 from Patent WO2006075084.
CS359761.1:1747-1771
GATGACTACCCTGAGAATCTCATCAAAGTT1747CCTGCCACATTTAGTGAGGGTTAATAATCGAATTCCCGCGGCCGTCGACCCGGGC
45 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi911, mRNA sequence.
CB275495.1:582-606
TCATCATCTTATACGAAATGCTCTGCAACG582CCTGCCACATTTAGTGAGGGTTAAT
PE39 Avicennia marina leaf cDNA Library Avicennia marina cDNA similar to fused-ccdB (Escherichia coli), mRNA sequence.
CD777460.1:262-286
GGCCAAAACTTATCATCATAATCGTGACAA262CCTGCCACATTTAGTGAGGGTTAATAAGCCGAATTCTGCAGATATCCATCACACT
DD76-48 Tobacco ESTs characterized by a hypersensitive response specific pattern of expression library Nicotiana tabacum cDNA clone DD76-48, mRNA sequence.
CV507133.1:80-104
TGCGCGCACCTCGACTAACTCTACGGGATA80CCTGCCACATTTAGTGAGGGTTAAT
DD-L9-1Q Sugar Beet differential display cDNA Beta vulgaris cDNA similar to (Cytochrome b), mRNA sequence.
CX779639.1:600-624
GTTGGGGTAAGTGTTCGGGGAGATATTATG600CCTGCCACATTTAGTGAGGGTTAATA
DD-L9-1K Sugar Beet differential display cDNA Beta vulgaris cDNA similar to (Cytochrome b), mRNA sequence.
CX779640.1:600-624
GTTGGGGTAAGTGTTCGGGGAGATATTATG600CCTGCCACATTTAGTGAGGGTTAATA
DD-L9-8Q Sugar Beet differential display cDNA Beta vulgaris cDNA similar to (dNTP-hexose glycosyl transferase), mRNA sequence.
CX779641.1:608-632
CCAACATTTTCGCTTAGGTCAGTGGGAATG608CCTGCCACATTTAGTGAGGGTTAATA
DD-L9-8K Sugar Beet differential display cDNA Beta vulgaris cDNA similar to (dNTP-hexose glycosyl transferase), mRNA sequence.
CX779642.1:608-632
CAACATTTTCGCTTAGGTCAGTGGGGAATG608CCTGCCACATTTAGTGAGGGTTAATA
DD-L8-2 Sugar Beet differential display cDNA Beta vulgaris cDNA similar to Triose phosphate/phosphate translocator, mRNA sequence.
CX779656.1:733-757
CTACATTTCTATAATCGCGCTGTTTGTTTG733CCTGCCACATTTAGTGAGGGTTAATAAGCCGAATTC
DD-L30-2 Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779682.1:239-263
AATAAGCACGGATCACTTCAATAACAGGTG239CCTGCCACATTTAGTGAGGGTTAAT
DD-P99-3.1 Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779701.1:236-260
CAAGTGCCGTTCACATGGAACCTTTCCCCT236CCTGCCACATTTAGTGAGGGTTAATA
DD-P99-2.1 Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779702.1:267-291
CGAAGGATGCCATTTGGACTGTGTAATGCT267CCTGCCACATTTAGTGAGGGTTAATA
DD-P99-1.3 Sugar Beet differential display cDNA Beta vulgaris cDNA similar to Thiosulfate sulfur transferase, mRNA sequence.
CX779703.1:329-353
TATTGAAGCCCTCTCCGATCACACCTCTCC329CCTGCCACATTTAGTGAGGGTTAATA
Sequence 9 from patent US 6593084.
AR353570.1:1-25
1ATTAACCCTCACTAAATGTGGCAGG
Sequence 35 from Patent WO0240666.
AX431402.1:1-25
1ATTAACCCTCACTAAATGTGGCAGG
JP 2002515754-A/20: Method for identifying translationally regulated genes.
BD195204.1:1-25
1ATTAACCCTCACTAAATGTGGCAGG
Sequence 95 from Patent WO2006075084.
CS359756.1:1126-1150
GAATTCACGCGTGGCCGCGGGAATTCGATT1126ATTAACCCTCACTAAATGTGGCAGGGGCTGATGGGACTGGTAAAGCTGTTGTCTC
Sequence 96 from Patent WO2006075084.
CS359757.1:1132-1156
ACGCGTGCGGCCGCGAATTCACTAGTGATT1132ATTAACCCTCACTAAATGTGGCAGGCAATGTCTCCCCTTCCTGTTGGGGAGGATT
Sequence 97 from Patent WO2006075084.
CS359758.1:1126-1150
GAATTCACGCGTGGCCGCGGGAATTCGATT1126ATTAACCCTCACTAAATGTGGCAGGGGTCCCCTCACTTCCCACATTGCTGCAAGT
Sequence 98 from Patent WO2006075084.
CS359759.1:1126-1150
GAATTCACGCGTGGCCGCGGGAATTCGATT1126ATTAACCCTCACTAAATGTGGCAGGTGCTGTGAAGAATTGGCGGTAATTGATTCG
Sequence 100 from Patent WO2006075084.
CS359761.1:1132-1156
ACGCGTGCGGCCGCGAATTCACTAGTGATT1132ATTAACCCTCACTAAATGTGGCAGGAGAGGACGTGATAGGACAGTTAAAAAAAAA
JP 2004512852-A/26: Fat Regulated Genes, Uses Thereof, and Compounds for Modulating Same.
DD010088.1:1-25
1ATTAACCCTCACTAAATGTGGCAGG
JP 2003235570-A/9: Polypeptide having interaction with hibernation-specific protein and its utilization.
DJ389557.1:1-25
1ATTAACCCTCACTAAATGTGGCAGG
Sequence 17 from patent US 8349562.
GZ703054.1:1-25
1ATTAACCCTCACTAAATGTGGCAGG
Sequence 17 from patent US 9109258.
HL076166.1:1-25
1ATTAACCCTCACTAAATGTGGCAGG
WO 1998045431-A/15: Cancer metastasis-associated gene.
HV447454.1:1-25
1ATTAACCCTCACTAAATGTGGCAGG
45 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi911, mRNA sequence.
CB275495.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGAGTAACGGCCAGATTTCACAACAAAACTTG
EST0861 Brassica juncea leaf disc explants Brassica juncea cDNA, mRNA sequence.
CK991435.1:16-40
AATTCACTAGTGATT16ATTAACCCTCACTAAATGTGGCAGGACAACAACATGAATTATGGACAAGGAAGAC
54-30 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605635.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGGCAAATTAGCATTGTAGAGGCAGTTCCGCC
54-31 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605636.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGCATGGCCAAAAAAAAAGAAAAAAGAATTGA
DD-L9-8Q Sugar Beet differential display cDNA Beta vulgaris cDNA similar to (dNTP-hexose glycosyl transferase), mRNA sequence.
CX779641.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGCAAAGAAAACTCTGGACGCTGATGATCCAA
DD-L9-8K Sugar Beet differential display cDNA Beta vulgaris cDNA similar to (dNTP-hexose glycosyl transferase), mRNA sequence.
CX779642.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGCAAAGAAAACTCTGGACGCTGATGATCCAA
DD-L8-2 Sugar Beet differential display cDNA Beta vulgaris cDNA similar to Triose phosphate/phosphate translocator, mRNA sequence.
CX779656.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGCAACTTAGGCCTGTCTTATTACTCGATCCA
DD-L29-2a Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779673.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGGATGGGACATGTAGGGGTTGATTCGCCCAT
DD-P99-3.1 Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779701.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGCTGTTAAACAGAAAAGATAACTCTTCCCGA
DD-P99-2.1 Sugar Beet differential display cDNA Beta vulgaris cDNA, mRNA sequence.
CX779702.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGGTGGCGCATGTGTATTGATTATAGACGATT
DD-P99-1.3 Sugar Beet differential display cDNA Beta vulgaris cDNA similar to Thiosulfate sulfur transferase, mRNA sequence.
CX779703.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGATGGGGAAGCAGTGAAAAAATAAGGGTTTG
BO8 Durum wheat leaf tissue Triticum turgidum subsp. durum cDNA clone BO8, mRNA sequence.
EC907728.1:11-35
GAATTCGATT11ATTAACCCTCACTAAATGTGGCAGGAAATAGGGTCCAAAGTAGTCAAATAATTGA
BA-Cemb-16 Differential display of COTTON GENOTYPE, leaf, one month of infection Gossypium hirsutum cDNA clone P9T6(c) 3', mRNA sequence.
JZ495615.1:47-71
AAAAAGATATCACTCAGCATAATGATGGCT47ATTAACCCTCACTAAATGTGGCAGGCGAAAAAAAAAAAGATATCACTCAGCATAA
BA-Cemb-16 Differential display of COTTON GENOTYPE, leaf, one month of infection Gossypium hirsutum cDNA clone P9T6(c) 3', mRNA sequence.
JZ495615.1:110-134
AAAAAGATATCACTCAGCATAATGAGGGCT110ATTAACCCTCACTAAATGTGGCAGGACACCGAAAAAAAAAGATATCACTCAGCAT
BA-Cemb-16 Differential display of COTTON GENOTYPE, leaf, one month of infection Gossypium hirsutum cDNA clone P9T6(c) 3', mRNA sequence.
JZ495615.1:175-199
AAAAAGATATCACTCAGCATAATGAGGGCT175ATTAACCCTCACTAAATGTGGCAGGCCGAAAAAAAAAGATATCACTCAGCATAAT
BA-Cemb-16 Differential display of COTTON GENOTYPE, leaf, one month of infection Gossypium hirsutum cDNA clone P9T6(c) 3', mRNA sequence.
JZ495615.1:237-261
AAAAAGATATCACTCAGCATAATGAGGGCT237ATTAACCCTCACTAAATGTGGCAGGCGAAAAAAAAAGATATCACTCAGCATAATG
BA-Cemb-16 Differential display of COTTON GENOTYPE, leaf, one month of infection Gossypium hirsutum cDNA clone P9T6(c) 3', mRNA sequence.
JZ495615.1:298-322
AAAAAGATATCACTCAGCATAATGAGGGCT298ATTAACCCTCACTAAATGTGGCAGGCCGAAAAAAAAAGATATCACTCAGCATAAT
Dendrobium grex Madame Thong-IN putative copper/zinc superoxide dismutase copper chaperone (ovg23) mRNA, partial cds.
AF100330.1:1-25
1ATTAACCCTCACTAAATGTGGCAGGGTGCTGGATGAATTTATGGTGGATATGACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTGCCACATTTAGTGAGGGTTAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTGCCACATTTAGTGAGGGTTAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.489 | 0.480 | search_plus_done; http://172.18.8.135:50400/match?q=CCTGCCACATTTAGTGAGGGTTAAT&k=0&no_gap=0&offset=0&limit=50
1.613 | 1.123 | search_minus_done; http://172.18.8.135:50400/match?q=ATTAACCCTCACTAAATGTGGCAGG&k=0&no_gap=0&offset=0&limit=32
1.633 | 0.021 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).