GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 08:16:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-105G10.
FP102418.3:122726-122745
CCACAACTGCGGCTTGGAGCTGATCCCTGG122726CCTGGGAACTCCATAGGACAAGGGGCAGCCAAAAAGTAAAACGATCATGT
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-261E8.
FP103045.3:189518-189537
TGTGGCTTGGATCTGATCCCTGGTGCCTGG189518CCTGGGAACTCCATAGGACAGCCAAAAAAGAAAAAAATTTATATGAGATC
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-262N14.
FP236141.3:5312-5331
CCACAACTGCGGCTTGGAGCTGATCCCTGG5312CCTGGGAACTCCATAGGACAAGGGGCAGCCAAAAAGTAAAACGATCATGT
Daucus carota subsp. sativus cultivar DH1 chromosome 4.
CP093346.1:35023004-35023023
ATGCACTGGGCAATACCTTAAATAACAAAG35023004CCTGGGAACTCCATAGGACAATTAGCATAAATTCAGGTACATAAAATACA
Daucus carota isolate Kuroda chromosome 4.
CP125304.1:22875817-22875836
ATGCACTGGGCAATACCTTAAATAACAAAG22875817CCTGGGAACTCCATAGGACAATTAGCATAAATTCAGGTACATAAAATACA
Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:21013963-21013982
GATCTCATATAAATTTTTTTCTTTTTTGGC21013963TGTCCTATGGAGTTCCCAGGCCAGGCACCAGGGATCAGATCCAAGCCACA
Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:34374428-34374447
TTGCTTTTGTCCTTTTTAGGGCCACACCCG34374428TGTCCTATGGAGTTCCCAGGCTAAGGGTCTAATTGGAGCTGTAGCTGCCG
Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:34376719-34376738
TTGCTTTTGTCCTTTTTAGGGCCACACCCG34376719TGTCCTATGGAGTTCCCAGGCTAAGGGTCTAATTGGAGCTGTAGCTGCCG
Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:47901015-47901034
ACATGATCGTTTTACTTTTTGGCTGCCCCT47901015TGTCCTATGGAGTTCCCAGGCCAGGGATCAGCTCCAAGCCGCAGTTGTGG
Sus scrofa genome assembly, chromosome: 6.
OY997213.1:21299729-21299748
GATCTCATATAAATTTTTTTCTTTTTTGGC21299729TGTCCTATGGAGTTCCCAGGCCAGGCACCAGGGATCAGATCCAAGCCACA
Sus scrofa genome assembly, chromosome: 6.
OY997213.1:34554496-34554515
TTGCTTTTGTCCTTTTTAGGGCCACACCCG34554496TGTCCTATGGAGTTCCCAGGCTAAGGGTCTAATTGGAGCTGTAGCTGCCG
Sus scrofa genome assembly, chromosome: 6.
OY997213.1:50219783-50219802
ACATGATCGTTTTACTTTTTGGCTGCCCCT50219783TGTCCTATGGAGTTCCCAGGCCAGGGATCAGCTCCAAGCCGCAGCTGCGG
Furcifer pardalis isolate Fpa_1 chromosome 1.
CP126890.1:31801737-31801756
GACCTAGCTGTTGCATGTTTGAGCTTCTGT31801737TGTCCTATGGAGTTCCCAGGGGAATTTTTTCCAAGATGACTGAAAGATAT
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-315I11.
CU929915.2:95892-95911
TGGCTTTTGTCCTTTTTAGGGCCACACCCG95892TGTCCTATGGAGTTCCCAGGCTAAGGGTCTAATTGGAGCTGTAGCTGCCG
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-255K9.
FP236140.2:71854-71873
GATCTCATATAAATTTTTTTCTTTTTTGGC71854TGTCCTATGGAGTTCCCAGGCCAGGCACCAGGGATCAGATCCAAGCCACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTGGGAACTCCATAGGACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTGGGAACTCCATAGGACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.095 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=CCTGGGAACTCCATAGGACA&k=0&no_gap=0&offset=0&limit=50
0.116 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=TGTCCTATGGAGTTCCCAGG&k=0&no_gap=0&offset=0&limit=45
0.122 | 0.006 | cgi_end;

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