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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:30:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

EST492006 cSTS Solanum tuberosum cDNA clone cSTS4I11 5' sequence, mRNA sequence.
BG593328.1:299-318
AGGAAAAGCGGCAAGATTGAGGTTCTTAGT299CCTGTCAATGGAGATGTTCGTGCATCCATTTCAATTGAAAGTCAAAATCA
Nicotiana tabacum cDNA, clone: BY14458, primer: M13 forward, sequence 1.
BP529556.1:90-109
AGGAAAAGTGGATCGATTGACGTGCTTAGT90CCTGTCAATGGAGATGTTCGTGCCTCCATTTCAAATGGAAGTCAAAATGA
Nicotiana sylvestris mRNA, expressed in root, clone: R-103_C01.
BP751986.1:238-257
GGAAAAGTGGGATCGATTGACGTGCTTAGT238CCTGTCAATGGAGATGTTCGTGCCTCCATTTCAAATGGAAGTCAAAATGA
EST710933 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABV27 5' end, mRNA sequence.
CK264855.1:335-354
AGGAAAAGCGGCAAGATTGAGGTTCTTAGT335CCTGTCAATGGAGATGTTCGTGCATCCATTTCAATTGAAAGTCAAAATCA
573.1 Tuber Skin Solanum tuberosum cDNA clone 573 5', mRNA sequence.
CN516928.1:364-383
AGGAAAAGCGGCAAGATTGAGGTTCTTAGT364CCTGTCAATGGAGATGTTCGTGCATCCATTTCAATTGAAAGTCAAAATCA
573.2 Tuber Skin Solanum tuberosum cDNA clone 573 5', mRNA sequence.
DN942155.1:364-383
AGGAAAAGCGGCAAGATTGAGGTTCTTAGT364CCTGTCAATGGAGATGTTCGTGCATCCATTTCAATTGAAAGTCAAAATCA
KF8C.109B11F.051215T7 KF8 Nicotiana tabacum cDNA clone KF8C.109B11, mRNA sequence.
EB427117.1:361-380
AGGAAAAGTGGATCGATTGACGTGCTTAGT361CCTGTCAATGGAGATGTTCGTGCCTCCATTTCAAATGGAAGTCAAAATGA
AGN_ELP006xh17f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence.
FG136959.1:357-376
AGGAAAAGTGGATCGATTGACGTGCTTAGT357CCTGTCAATGGAGATGTTCGTGCCTCCATTTCAAATGGAAGTCAAAATGA
TT-06_M12 K326 trichome library Nicotiana tabacum cDNA, mRNA sequence.
FG640759.1:340-359
AGGAAAAGTGGATCGATTGTCGTGCTTAGT340CCTGTCAATGGAGATGTTCGTGCCTCCATTTCAAATGGAAGTCAAAATGA
Solanum melongena mRNA, clone: LS004A12, 5'end, expressed in ovary at anthesis.
FS019576.1:270-289
AGGAAAAATGGCCAGATTGAGCTTCTTAGT270CCTGTCAATGGAGATGTTCGTGCATCCATTTCAATTGACAATCAAAATCA
Nicotiana tabacum cDNA, clone: TBK02GR0011_4_F11, 5'-end sequence.
FS404848.1:362-381
AGGAAAAATGGCTCGATTGACGTGCTTAGT362CCTGTCAATGGAGATGTTCGTGCCTCCATTTCAAATGGAAGTCAAAATGA
NSYL2316 Nicotiana sylvestris normalized full-length cDNA Library Nicotiana sylvestris cDNA 5', mRNA sequence.
JZ950104.1:264-283
AGGAAAAGTGGATCGATTGACGTGCTTAGT264CCTGTCAATGGAGATGTTCGTGCCTCCATTTCAAATGGAAGTCAAAATGA
CHO_OF889xo22r1.ab1 CHO_OF Nicotiana tabacum genomic 3', genomic survey sequence.
ET814825.1:125-144
ATTAACACTTCACAGATTGAGGGTCTTAGT125CCTGTCAATGGAGATGTTCGTGCATCCATCTCAGATGAAAGTCAAAATCA
CHO_OF6888xf20f1.ab1 CHO_OF6 Nicotiana tabacum genomic 5', genomic survey sequence.
FI000194.1:91-110
ATTAACACTTCACAGATTGAGGGTCTTAGT91CCTGTCAATGGAGATGTTCGTGCATCCATCTCAGATGAAAGTCAAAATCA
Solanum dulcamara genome assembly, chromosome: 5.
OX359256.1:1126406-1126425
GCATATGTGCTGCAGATTGAGGTTCTTAGT1126406CCTGTCAATGGAGATGTTCGTGCATCCATTTCAATTGAAAATCAAAATCA
Solanum tuberosum cultivar P8 chromosome 8.
CP046686.1:4961302-4961321
TGATTTTGACTTTCAATTGAAATGGATGCA4961302CGAACATCTCCATTGACAGGACTAAGAACCTCAATCTGCAGTATAAAAGY
Solanum tuberosum cultivar MSH/14-112 chromosome 8.
CP046701.1:4962676-4962695
TGATTTTGACTTTCAATTGAAATGGATGCA4962676CGAACATCTCCATTGACAGGACTAAGAACCTCAATCTGCAGTATAAAAGY
Solanum pinnatisectum cultivar CGN17745 chromosome 8.
CP047564.1:4953879-4953898
TGATTTTGACTTTCAATTGAAATGGATGCA4953879CGAACATCTCCATTGACAGGACTAAGAACCTCAATCTGCAGTATAAAAGC
Solanum tuberosum cultivar Solyntus chromosome 8.
CP055241.1:5316058-5316077
TGATTTTGACTTTCAATTGAAATGGATGCA5316058CGAACATCTCCATTGACAGGACTAAGAACCTCAATCTGCAGTATAAAAGC
Solanum verrucosum cultivar 11H23 chromosome 8.
CP133619.1:4652223-4652242
TGATTTTGACTTTCAATTGAAATGGATGCA4652223CGAACATCTCCATTGACAGGACTAAGAACCTCAATCTGCAGTATAAAGCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTGTCAATGGAGATGTTCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTGTCAATGGAGATGTTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.842 | 0.834 | search_plus_done; http://172.18.8.135:50400/match?q=CCTGTCAATGGAGATGTTCG&k=0&no_gap=0&offset=0&limit=50
0.948 | 0.105 | search_minus_done; http://172.18.8.135:50400/match?q=CGAACATCTCCATTGACAGG&k=0&no_gap=0&offset=0&limit=35
0.951 | 0.004 | cgi_end;

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