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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 03:13:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:4526239-4526258
TTATTATATATAGGGGTGGGACTTTTGCGA4526239CCTTACCATCTCAAACTCCACAAACCATTTGTTCCCATCCCTTCATCTCC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:4763169-4763188
TTATTATATATAGGGGTGGGACTTTTGCGA4763169CCTTACCATCTCAAACTCCACAAACCATTTGTTCCCATCCTTTCATCTCC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:4236209-4236228
TTATTATATATAGGGGTGGGACTTTTGCGA4236209CCTTACCATCTCAAACTCCACAAACCATTTGTTCCCATCCTTTCATCTCC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:4660021-4660040
TTATTATATATAGGGGTGGGACTTTTGCGA4660021CCTTACCATCTCAAACTCCACAAACCATTTGTTCCCATCCTTTCATCTCC
Agrostemma githago genome assembly, chromosome: 7.
OY288245.1:11889492-11889511
GCCCACATTCAACCTTTCACTTTCCATTAG11889492CCTTACCATCTCAAACTCCAACCTCCACCATCGATAACCCATAACTCGAT
Agrostemma githago genome assembly, chromosome: 7.
OY288245.1:11895073-11895092
GCCCACATTCAACCTTTCACTTTCCATTAG11895073CCTTACCATCTCAAACTCCAACCTCCACCATCGATAACCCATAACTCGAT
Agrostemma githago genome assembly, chromosome: 13.
OY288251.1:47284040-47284059
GCCCACATTCAACCTTTCACTCTCCATTAG47284040CCTTACCATCTCAAACTCCAACCTCCACCATCGATAAGCCATAACTCGAT
Agrostemma githago genome assembly, chromosome: 20.
OY288258.1:38770724-38770743
GCCCATATTCAACCTTTCACTTTCCATTAG38770724CCTTACCATCTCAAACTCCAACCTCCACCATCGATAACCCATAACTCGAT
Agrostemma githago genome assembly, chromosome: 23.
OY288261.1:41682428-41682447
TTCTTTTCTCATTTTGATGGGCATAACATA41682428CCTTACCATCTCAAACTCCACATCAATAGCATTAGTCCCGGTCCCAGAAT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:4410197-4410216
TTATTATATATAGGGGTGGGACTTTTGCGA4410197CCTTACCATCTCAAACTCCACAAACCATTTGTTCCCATCCTTTCATCTCC
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:4907226-4907245
TTATTATATATAGGGGTGGGACTTTTCCGA4907226CCTTACCATCTCAAACTCCACAAACCATTTGTTCCCATCCTTTCATCTCC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:3674915-3674934
TTATTATATATAGGGGTGGGACTTTTGCGA3674915CCTTACCATCTCAAACTCCACAAACCATTTGTTCCCATCCTTTCATCTCC
Rhinatrema bivittatum genome assembly, chromosome: 5.
LR584391.1:103644421-103644440
AGACGCCCTGCTCAGGTTTGGAGAGTGACA103644421TGGAGTTTGAGATGGTAAGGGGCGAGAGCAAGCTCCAGACAACCCGGCAA
Rhinatrema bivittatum genome assembly, chromosome: 5.
LR584391.1:103750132-103750151
AGACGCCCTGCTCAGGTTTGGAGAGTGACA103750132TGGAGTTTGAGATGGTAAGGGGCGAGAGCAAGCTCCAGACAACCCGGCAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:42031449-42031468
GGAGATGAAAGGATGGGAACAAATGGTTTG42031449TGGAGTTTGAGATGGTAAGGTCGCAAAAGTCCCACCCCTATATATAATAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:38764306-38764325
GGAGATGAAAGGATGGGAACAAATGGTTTG38764306TGGAGTTTGAGATGGTAAGGTCGCAAAAGTCCCACCCCTATATATAATAA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:42372689-42372708
GGAGATGAAAGGATGGGAACAAATGGTTTG42372689TGGAGTTTGAGATGGTAAGGTCGCAAAAGTCCCACCCCTATATATAATAA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:41773692-41773711
GGAGATGAAAGGATGGGAACAAATGGTTTG41773692TGGAGTTTGAGATGGTAAGGTCGCAAAAGTCCCACCCCTATATATAATAA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:41206793-41206812
GGAGATGAAAGGATGGGAACAAATGGTTTG41206793TGGAGTTTGAGATGGTAAGGTCGCAAAAGTCCCACCCCTATATATAATAA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:41761936-41761955
GGAGATGAAAGGATGGGAACAAATGGTTTG41761936TGGAGTTTGAGATGGTAAGGTCGCAAAAGTCCCACCCCTATATATAATAA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:42648658-42648677
GGAGATGAAAGGATGGGAACAAATGGTTTG42648658TGGAGTTTGAGATGGTAAGGTCGCAAAAGTCCCACCCCTATATATAATAA
Agrostemma githago genome assembly, chromosome: 16.
OY288254.1:56483043-56483062
ATCGAGTTATGGGTTATCGATGGTGGAGGT56483043TGGAGTTTGAGATGGTAAGGCTAATGGAAAGTGAAAGGTTGAATGTGGGC
Agrostemma githago genome assembly, chromosome: 16.
OY288254.1:56505422-56505441
ATCGAGTTATGGGTTATCGATGGTGGAGGT56505422TGGAGTTTGAGATGGTAAGGCTAATGGAAAGTGAAAGGTTGAATGTGGGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTTACCATCTCAAACTCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTACCATCTCAAACTCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.173 | 0.164 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTACCATCTCAAACTCCA&k=0&no_gap=0&offset=0&limit=50
0.288 | 0.115 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAGTTTGAGATGGTAAGG&k=0&no_gap=0&offset=0&limit=38
0.296 | 0.008 | cgi_end;

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