GGGenome | Results

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2025-04-06 01:23:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

0118674 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV113362.1:120-139

ACTAAAGTTAAAACACAAACAAACATTGGC120CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

0148241 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV169621.1:187-206

ACTAAAGTTAAAACACAAACAAACATTGGC187CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

BR018711 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-150H03 5', mRNA sequence.
EX034067.1:128-147

ACTAAAGTTAAAACACAAACAAACATTGGC128CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

BR019944 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-169F07 5', mRNA sequence.
EX035300.1:167-186

ACTAAAGTTAAAACACAAACAAACATTGGC167CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

BR060880 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-052A07 5', mRNA sequence.
EX076236.1:87-106

ACTAAAGTTAAAACACAAACAAACATTGGC87CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

BR125552 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-47A06 5', mRNA sequence.
EX141722.1:143-162

ACTAAAGTTAAAACACAAACAAACATTGGC143CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

Brassica rapa subsp. pekinensis mRNA, clone: BBRAF34M04, 3'-end sequence.
FY424455.1:188-207

ACTAAAGTTAAAACACAAACAAACATTGGC188CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

BNAOV1GH_T3_021_H01_12JULY2007_001 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR441499.1:106-125

ACTAAAGTTAAAACACAAACAAACATTGGC106CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

0253073 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO920243.1:105-124

ACTAAAGTTAAAACACAAACAAACATTGGC105CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

0277331 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO951431.1:102-121

ACTAAAGTTAAAACACAAACAAACATTGGC102CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

0268180 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO961705.1:100-119

CACTAAAGTTAAACACAAACAAACATTGGC100CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2834.
FX711296.1:129-148

ACTAAAGTTAAAACACAAACAAACATTGGC129CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11977.
FX754370.1:132-151

ACTAAAGTTAAAACACAAACAAACATTGGC132CCTTAGACTACAAATGGCGATGGTGCTGGCACTCAAGAGGAGTAACAGGA

Sequence 168325 from Patent EP2090662.
HB819111.1:938-957

TCCTGTTACTCCTCTTGAGTGCCAGCACCA938TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

26RDBNT_UP_008_H02_20JAN2004_002 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
CN735815.1:538-557

TCCTGTTACTCCTCTTGAGTGCCAGCACCA538TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

53COT5_T3_016_B11_05SEP2004_093 Brassica napus 36hr germinating seed library 53COT5 Brassica napus cDNA 5', mRNA sequence.
DY023814.1:401-420

TCCTGTTACTCCTCTTGAGTGCCAGCACCA401TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

34ETGS48_UP_023_E10_11FEB2005_072 Brassica napus 34ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE431093.1:612-631

TCCTGTTACTCCTCTTGAGTGCCAGCACCA612TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

35ETGS60_UP_007_C03_29MAR2004_027 Brassica napus 35ETGS60 Brassica napus cDNA 5', mRNA sequence.
EE431702.1:504-523

TCCTGTTACTCCTCTTGAGTGCCAGCACCA504TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

BNBS2DCT_UP_001_G05_11MAR2005_035 Brassica napus seeds BNBS2DCT Brassica napus cDNA 5', mRNA sequence.
EE451125.1:538-557

TCCTGTTACTCCTCTTGAGTGCCAGCACCA538TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

EX2PLCL3_UP_023_B04_08MAY2003_015 Brassica napus EX2PLCL3 Brassica napus cDNA 5', mRNA sequence.
EE503486.1:192-211

TCCTGTTACTCCCCTTGAGTGCCAGCACCA192TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

BNZB_UP_117_D11_19AUG2004_089 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE565138.1:493-512

TCCTGTTACTCCTCTTGAGTGCCAGCACCA493TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

60ACAB48R_UP_022_G01_22OCT2004_003 Brassica napus 60ACAB48 Brassica napus cDNA 5', mRNA sequence.
ES898482.1:529-548

TCCTGTTACTCCTCTTGAGTGCCAGCACCA529TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTT

0146903 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV169021.1:612-631

TCCTGTTACTCCTCTTGAGTGCCAGCACCA612TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

0148186 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV169605.1:672-691

TCCTGTTACTCCTCTTGAGTGCCAGCACCA672TCGCCATTTGTAGTCTAAGGGCCAATGTTTGGTTGTGTTTTAACTTTAGT

BR058032 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-015B04 5', mRNA sequence.
EX073388.1:650-669

TCCTGTTACTCCTCTTGAGTGCCAGCACCA650TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

BR087750 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-045D10 5', mRNA sequence.
EX101460.1:590-609

TCCTGTTACTCCTCTTGAGTGCCAGCACCA590TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

BR101530 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-05G09 5', mRNA sequence.
EX117700.1:867-886

TCCTGTTACTCCTCTTGAGTGCCAGCACCA867TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTT

BR102743 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-19F12 5', mRNA sequence.
EX118913.1:720-739

TCCTGTTACTCCTCTTGAGTGCCAGCACCA720TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTTACTTTAGT

BR125647 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-48C08 5', mRNA sequence.
EX141817.1:62-81

TCCTGTTACTCCTCTTGAGTGCCAGCACCA62TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

BR126062 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-53H12 5', mRNA sequence.
EX142232.1:302-321

TCCTGTTACTCCTCTTGAGTGCCAGCACCA302TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

Brassica rapa xyloglucan endotransglycosylase/hydrolase (XTH1) mRNA, complete cds.
AY834281.1:847-866

TCCTGTTACTCCTCTTGAGTGCCAGCACCA847TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:1816323-1816342

TCCTGTTACTCCTCTTGAGTGCCAACACCA1816323TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTGTTTTAACTTAGTGAAGA

Brassica napus genome assembly, chromosome: A09.
HG994363.1:1699933-1699952

TCCTGTTACTCCTCTTGAGTGCCAACACCA1699933TCGCCATTTGTAGTCTAAGGGACAATGTTTGTGTTTTAACTTAGTGAAGA

Brassica rapa genome, scaffold: A09.
LR031568.1:1442474-1442493

TCCTGTTACTCCTCTTGAGTGCCAGCACCA1442474TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

Brassica rapa genome assembly, chromosome: A09.
LS974625.2:1666355-1666374

TCCTGTTACTCCTCTTGAGTGCCAGCACCA1666355TCGCCATTTGTAGTCTAAGGGCCAATGTTTGTTTGTGTTTTAACTTTAGT

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.814 | 0.806 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTAGACTACAAATGGCGA&k=0&no_gap=0&offset=0&limit=50
1.697 | 0.883 | search_minus_done; http://172.18.8.135:50400/match?q=TCGCCATTTGTAGTCTAAGG&k=0&no_gap=0&offset=0&limit=37
1.712 | 0.015 | cgi_end;

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