GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:47:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Meles meles genome assembly, chromosome: 2.
OV277442.1:88756007-88756026
AGTTCACAGACCTATCTGATATTGTCCTAC88756007CCTTCAAACCCTCTCCCTTCACTCTGTGGTCAAAGAATTAACTATAAAGA
Pipistrellus pygmaeus genome assembly, chromosome: 11.
OX465313.1:8685554-8685573
TGCAGCCTCCTCATAGCTCCCCCACTCTCG8685554CCTTCAAACCCTCTCCCTTCCACCCGGGAGCACAGGATATGGCATCGTTG
Scyliorhinus canicula genome assembly, chromosome: 5.
LR744034.1:112876351-112876370
CACCAACTCTCCATGCAGCCCCCAACCCTC112876351CCTTCAAACCCTCTCCCTTCAACCCTTTCTTCACACATCCCTCACACTAC
Chroicocephalus ridibundus genome assembly, chromosome: 9.
OZ001742.1:4496226-4496245
CTTTGTCCCACCTCCCCAACTCCTTCAGGC4496226CCTTCAAACCCTCTCCCTTCAGGCACACTCTCCCCAGCATCCTTTTCCCC
Solanum melongena mRNA, clone: SmFL27G06, 5'end.
FS084792.1:50-69
CTTCAACAGCTCTTTCCCGTTCCATCACCA50CCTTCAAACCCTCTCCCTTCCAACCACGCGCCTCCTCTATTAACCCTCTC
Fagus sylvatica genome assembly, chromosome: 1.
OU015761.1:37646173-37646192
TCCATTTCTCATTAACCCACACCTCTCTCC37646173CCTTCAAACCCTCTCCCTTCATTTCCCCTCCTCTTGTCCTACGCCCTCTC
Ischnura elegans genome assembly, chromosome: 9.
OV121109.1:11320269-11320288
CGCAAATCGTCTTTTTAGCACCTCCTCTCT11320269CCTTCAAACCCTCTCCCTTCCACCTCCAAACCACATCCATTCCAATCCTT
Cydia fagiglandana genome assembly, chromosome: 9.
OY750799.1:4551365-4551384
TATAAAAACGGAACAAATGGAACACTTCTC4551365CCTTCAAACCCTCTCCCTTCTCCTCCTTTCTCCCTTCTCCCTCCTCCTCC
Pipistrellus pipistrellus genome assembly, chromosome: 11.
LR862367.1:63931161-63931180
CAACGATGCCATATCCTGTGCTCCCGGGTG63931161GAAGGGAGAGGGTTTGAAGGAGAGAGTGGGGAAGCTATGAGGAGGCTGCA
Myotis daubentonii genome assembly, chromosome: 8.
OY725367.1:80750085-80750104
TAAACACAGAGAGTGGACTAGTAATTAGCA80750085GAAGGGAGAGGGTTTGAAGGACTGGGAGAAGAAGCAAAGAGACCGAGAAG
Fringilla coelebs genome assembly, chromosome: 1.
OY740724.1:106716326-106716345
TTCTGTTTGACTTGTATATTAGTGATGGGT106716326GAAGGGAGAGGGTTTGAAGGGGTTTTTTGGGGTTGTTTTTTTTGTGTGTG
Sympetrum striolatum genome assembly, chromosome: 10.
OX388350.1:56885594-56885613
GAAGGGAGAGGTTGTGAAGGGAGAGGGTGG56885594GAAGGGAGAGGGTTTGAAGGGAGAGGGTGGGAGTGGAGAGTGTGGTAAGG
Sympetrum striolatum genome assembly, chromosome: 10.
OX388350.1:56886194-56886213
GAAGGGAGAGGGTTGGTAAGTATAGGGTGG56886194GAAGGGAGAGGGTTTGAAGGGAGAGGTTGTGAAGGGATATGTTGTGAAGT
Sympetrum striolatum genome assembly, chromosome: 10.
OX388350.1:56886509-56886528
GAAGGGAGAGGGTTGGTAGGTAGAGGGTGG56886509GAAGGGAGAGGGTTTGAAGGTAGAGGGTGGGAAGGGAGAGGGTTGATAGG
Sympetrum striolatum genome assembly, chromosome: X.
OX388352.1:80454016-80454035
TTAGGGAGAGCGTGGTTAGGGAGAAGGTGG80454016GAAGGGAGAGGGTTTGAAGGGAAAGGGTGGATAGGGAGAGGGAGCGTAGG
Sympetrum striolatum genome assembly, chromosome: X.
OX388352.1:80454372-80454391
TTAGGGAGAGCGTGGTTAGGGAGAAGGTGG80454372GAAGGGAGAGGGTTTGAAGGGAAAGGGTGGATAGGGAGAGGGAGCGTAGG
Sepioteuthis lessoniana genome assembly, chromosome: 20.
OY757923.1:53498059-53498078
TCATTTCTAGAGATTCTGTTTTGCTCTCAA53498059GAAGGGAGAGGGTTTGAAGGTTAAGACGACGTCCCCACCTTGAAACATGT
Pyrausta purpuralis genome assembly, chromosome: 13.
OZ001655.1:12359141-12359160
AAGTTCCCACTCGTTCCTCTTGAGCCGGAA12359141GAAGGGAGAGGGTTTGAAGGTCATATTTTAGTTTTTTGTCACATATATTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTTCAAACCCTCTCCCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTCAAACCCTCTCCCTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.190 | 0.181 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTCAAACCCTCTCCCTTC&k=0&no_gap=0&offset=0&limit=50
0.219 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGGGAGAGGGTTTGAAGG&k=0&no_gap=0&offset=0&limit=42
0.226 | 0.007 | cgi_end;

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