GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 03:06:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2DC50TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY937813.1:409-430
GTCTTGGTTACATTCAGCCTTCTCATCTTC409CCTTCACCGAGCTTCTCAGATTTATTCTCTTTGCTAACTTCTCCATCGTTGG
RR3F503TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD550200.1:388-409
GTCTTGGTTACATTCAGCCTTCTCATCTTC388CCTTCACCGAGCTTCTCAGATTTATTCTCTTTGCTAACTTCTCCATCGTTGG
RS2F494TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD569625.1:365-386
GTCTTGGTTACATTCAGCCTTCTCATCTTC365CCTTCACCGAGCTTCTCAGATTTATTCTCTTTGCTAACTTCTCCATCGTTGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_82367.
FX787505.1:252-273
GTCTTGGTTACATTCAGCCTTCTCATCTTC252CCTTCACCGAGCTTCTCAGATTTATTCT
TSA: Raphanus sativus RS04446 mRNA sequence.
JT788993.1:368-389
GTCTTGGTTACATTCAGCCTTCTCATCTTC368CCTTCACCGAGCTTCTCAGATTTATTCTCTTTGCTAACTTCTCCATTGTTGG
TSA: Raphanus sativus RS04447 mRNA sequence.
JT788994.1:368-389
GTCTTGGTTACATTCAGCCTTCTCATCTTC368CCTTCACCGAGCTTCTCAGATTTATTCTCTTTGCTAACTTCTCCATTGTTGG
Raphanus sativus DNA, clone: RSDH22I12_RP-2.
GA883919.1:224-245
CCAACAATGGAGAAGTTAGCAAAGAGAATA224AATCTGAGAAGCTCGGTGAAGGGAAGATGAGAAGGCTGAATGTAACCAAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTTCACCGAGCTTCTCAGATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTCACCGAGCTTCTCAGATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.300 | 0.292 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTCACCGAGCTTCTCAGATT&k=0&no_gap=0&offset=0&limit=50
0.349 | 0.049 | search_minus_done; http://172.18.8.135:50400/match?q=AATCTGAGAAGCTCGGTGAAGG&k=0&no_gap=0&offset=0&limit=44
0.350 | 0.001 | cgi_end;

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