GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 17:28:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Musa troglodytarum cultivar karat chromosome 9.
CP097511.1:6414773-6414792
GGAGGTATCTTCATCAACCCAGCTCGCATG6414773CCTTGCAGGACAAGCAACTTCATATATATATTTCCTTTTCTTTGCCACTT
Musa troglodytarum cultivar karat chromosome 9.
CP097511.1:6768098-6768117
GGAGGTATCTTCATCAACCCAGCTCGCATG6768098CCTTGCAGGACAAGCAACTTCATATATATATTTCCTTTTCTTTGCCACTT
TSA: Musa acuminata AAA Group Unigene60696_B1 mRNA sequence.
JV344652.1:77-96
GGGGCAAAGAAAAGGAAATATATATATATG77AAGTTGCTTGTCCTGCAAGGCATGCAAACTGGGTTGATGAAGATACCTCC
TSA: Musa acuminata AAA Group Unigene79057_NK1 mRNA sequence.
JV392460.1:77-96
GGGGCAAAGAAAAGGAAATATATATATATG77AAGTTGCTTGTCCTGCAAGGCATGCAAACTGGGTTGATGAAGATACCTCC
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:35650178-35650197
GGGGCAAAGAAAAGGAAATATATATATATG35650178AAGTTGCTTGTCCTGCAAGGCATGCGAGCTGGGTTGATGAAGATACCTCC
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:39355303-39355322
GGGGCAAAGAAAAGGAAATATATATATATG39355303AAGTTGCTTGTCCTGCAAGGCATGCGAGCTGGGTTGATGAAGATACCTCC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A10.
HG996476.1:32907404-32907423
GGGGCAAAGAAAAGGAAATATATATATATG32907404AAGTTGCTTGTCCTGCAAGGCATGCGAGCTGGGTTGATGAAGATACCTCC
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:36728302-36728321
GGGGCAAAGAAAAGGAAATATATATATATG36728302AAGTTGCTTGTCCTGCAAGGCATGCAAGCTGGGTTGATGAAGATACCTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTTGCAGGACAAGCAACTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTGCAGGACAAGCAACTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.100 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTGCAGGACAAGCAACTT&k=0&no_gap=0&offset=0&limit=50
0.153 | 0.053 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTTGCTTGTCCTGCAAGG&k=0&no_gap=0&offset=0&limit=48
0.157 | 0.004 | cgi_end;

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