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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 18:43:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 1658 from patent US 9771598.
MI092819.1:3785-3804
CCGTGGCACCAAGTGATCATGGTGGGGATG3785CCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGGGCCTGCATCCACGAAGG
Sequence 1658 from patent US 10501751.
MO574636.1:3785-3804
CCGTGGCACCAAGTGATCATGGTGGGGATG3785CCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGGGCCTGCATCCACGAAGG
Sequence 1658 from patent US 11453888.
OO581507.1:3785-3804
CCGTGGCACCAAGTGATCATGGTGGGGATG3785CCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGGGCCTGCATCCACGAAGG
RS1F426JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD566650.1:731-750
CCATGGCACCAAGTGATCATGGTGGGGATA731CCTTGCTCGTTACAAGCCTCTTCGTAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_587.
FX704113.1:903-922
CCGTGGCACCAAGTGATCATGGTGGGGATG903CCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGGGCCTGCATCCACGAAGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_16546.
FX740198.1:731-750
CCGTGGCACCAAGTGATCATGGTGGGGATG731CCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGGGCCTGCATCCACGAAGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_53098.
FX794532.1:116-135
CCATGGCACCAAGTGATCATGGTGGGGATA116CCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGAGATTGCATCCAGGAAGG
BOHHY39TF BOHH Brassica oleracea genomic clone BOHHY39, genomic survey sequence.
BH555039.1:66-85
CCATGGCACCAAGTGATCATGGTGGGGATG66CCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGGGCCTGCATCCAAGAAGG
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 5.
CP094635.1:21518837-21518856
CCATGGCACCATGTGATCATCGTAGGGATA21518837CCTTGCTCGTTACAAGCCTCTTCATACAACGAAGATGGCGTTTGCATCCA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:30448088-30448107
CCATGGCACCAAGTGATCATGGTGGGGATG30448088CCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGGGCCTGCATCCAAGAAGG
Camelina sativa cultivar CO46 chromosome 10.
CP131540.1:11915934-11915953
CCATGGCACCAAGTGATCATCGTAGGGATA11915934CCTTGCTCGTTACAAGCCTCTTCATACAACGAAGATGGCGATTGCATCCA
Camelina sativa cultivar CO46 chromosome 11.
CP131541.1:14382285-14382304
CCATGGCACCATGTGATCATCGTAGGGATA14382285CCTTGCTCGTTACAAGCCTCTTCATACAACGAAGATGGCGTTTGCATCCA
Camelina sativa cultivar CO46 chromosome 12.
CP131542.1:16634052-16634071
CCATGGCACCAAGTGATCATCGTAGGGATA16634052CCTTGCTCGTTACAAGCCTCTTCATACAAAGAAGATGGCGTTTGCATCCA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:13678902-13678921
CCATGGCACCAAGTGATCATGGTGGGGATG13678902CCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGGGCCTGCATCCACGAAGG
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:13584339-13584358
CCATGGCACCAAGTGATCATGGTGGGGATA13584339CCTTGCTCGTTACAAGCCTCTTCGTAGGAAGGAGATTGCATCCAGGAAGG
Barbarea vulgaris genome assembly, chromosome: 4.
OY763890.1:10656121-10656140
CCATGGCACCATGTGATCATCGTTGGGATC10656121CCTTGCTCGTTACAAGCCTCTTCATACAACGAAGTTGGCGATTGCATCCA
Nasturtium officinale genome assembly, chromosome: 5.
OY978503.1:7554090-7554109
CCATGGCACCATGTGATCATCGTTGGAATC7554090CCTTGCTCGTTACAAGCCTCCTCATACAACGAAGATGGCGCTTGCATCCA
Lepidium didymum genome assembly, chromosome: 8.
OY986980.1:9828338-9828357
CCATGGCACCATGTGATCATCGTAGGGATT9828338CCTTGCTCGTTACAAGCCTCTTCATACATCGTAGATGGCGACTGCATCCA
Lepidium didymum genome assembly, chromosome: 4.
OY986994.1:10558573-10558592
CCATGGCACCATGTGATCATCGTAGGGATT10558573CCTTGCTCGTTACAAGCCTCTTCATACATCGTAGATGGCGACTGCATCCA
Cardamine chenopodiifolia genome assembly, chromosome: 7.
OZ000465.1:9276161-9276180
CCATGGCACCATGTGATCATCGTTGGGATC9276161CCTTGCTCGTTACAAGCCTCTTCATACAACGAAGATGGCGATTGCATCCA
Eudasyphora cyanicolor genome assembly, chromosome: 2.
OZ005735.1:257266167-257266186
ACAGTGTTGTGTAGGGTATAATGAGGTAAT257266167CCTTGCTCGTTACAAGCCTCATGTCCCAAACAAAAACTAAGGGGCAAACG
Sequence 66377 from Patent WO2008034648.
FB847104.1:292-311
CCTTCTTGGATGCAGGCCCCTTCCTACGAA292GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Sequence 66377 from Patent EP2090662.
HB717163.1:292-311
CCTTCTTGGATGCAGGCCCCTTCCTACGAA292GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Sequence 193145 from Patent EP2090662.
HB843931.1:387-406
CCTTCTTGGATGCAGGCCCCTTCCTACGAA387GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Sequence 193155 from Patent EP2090662.
HB843941.1:387-406
CCTTCTTGGATGCAGGCCCCTTCCTACGAA387GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
E3107 Chinese cabbage etiolated seedling library Brassica rapa subsp. pekinensis cDNA clone E3107, mRNA sequence.
BG544993.1:360-379
CCTTCGTGGATGCAGGCCCCTTCCTACGAA360GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCACGG
Brassica oleracea var. viridis mRNA, clone: KALE-033F20, 5' end sequence.
DK468299.1:457-476
CCTTCTTGGATGCAGGCCCCTTCCTACGAA457GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Brassica oleracea var. viridis mRNA, clone: KALE-060P20, 5' end sequence.
DK478862.1:469-488
CCTTCTTGGATGCAGGCCCCTTCCTACGAA469GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Brassica oleracea var. viridis mRNA, clone: KALE-063F01, 5' end sequence.
DK479752.1:466-485
CCTTCTTGGATGCAGGCCCCTTCCTACGAA466GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Brassica oleracea var. viridis mRNA, clone: KALE-070P24, 5' end sequence.
DK482692.1:456-475
CCTTCTTGGATGCAGGCCCCTTCCTACGAA456GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Brassica oleracea var. viridis mRNA, clone: KALE-071P21, 5' end sequence.
DK483073.1:561-580
CCTTCTTGGATGCAGGCCCCTTCCTACGAA561GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Brassica oleracea var. viridis mRNA, clone: KALE-096E23, 5' end sequence.
DK492384.1:257-276
CCTTCTTGGATGCAGGCCCCTTCCTACGAA257GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Brassica oleracea var. viridis mRNA, clone: KALE-098P09, 5' end sequence.
DK493399.1:468-487
CCTTCTTGGATGCAGGCCCCTTCCTACGAA468GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Brassica oleracea var. viridis mRNA, clone: KALE-119B13, 5' end sequence.
DK501093.1:456-475
CCTTCTTGGATGCAGGCCCCTTCCTACGAA456GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
31ETGS12_UP_004_B01_12MAR2004_013 Brassica napus 31ETGS12 Brassica napus cDNA 5', mRNA sequence.
EE423761.1:457-476
CCTTCTTGGATGCAGGCCCCTTCCTACGAA457GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
BNBS2DCT_UP_003_A10_11MAR2005_080 Brassica napus seeds BNBS2DCT Brassica napus cDNA 5', mRNA sequence.
EE451221.1:577-596
CCTTCGTGGATGCAGGCCCCTTCCTACGAA577GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
EST6346 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B292E071, mRNA sequence.
EL628838.1:351-370
CCTTCGCGGATGCAGGCCCCTTCCTACGAA351GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
36RDBRG_UP_086_E05_20JAN2006_039 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES930026.1:187-206
CCTTCGTGGATGCAGGCCCCTTCCTACGAA187GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
39RDBRT_UP_088_H01_24JAN2006_001 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
ES936874.1:369-388
CCTTCGTGGATGCAGGCCCCTTCCTACGAA369GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCACGG
BNSCS2CT_UP_140_F05_23APR2007_037 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV025974.1:238-257
CCTTCTTGGATGCAGGCCCCTTCCTACGAA238GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
BNSCS2CT_UP_305_H01_25MAY2007_001 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV037941.1:511-530
CCTTCGTGGATGCAGGCCCCTTCCTACGAA511GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
BNSCS4CT_UP_277_C12_26MAY2007_092 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV079654.1:305-324
CCTTCTTGGATGCAGGCCCCTTCCTACGAA305GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
0130382 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV125070.1:479-498
CCTTCGTGGATGCAGGCCCCTTCCTACGAA479GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
0080626 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156764.1:423-442
CCTTCGTGGATGCAGGCCCCTTCCTACGAA423GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
0083916 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV160054.1:424-443
CCTTCGTGGATGCAGGCCCCTTCCTACGAA424GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
0098680 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV197527.1:200-219
CCTTCGTGGATGCAGGCCCCTTCCTACGAA200GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
RR2AA75TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV535738.1:532-551
CCTTCCTGGATGCAATCTCCTTCCTACGAA532GAGGCTTGTAACGAGCAAGGTATCCCCACCATGATCACTTGGTGCCATGG
RR2BD59TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV539084.1:357-376
CCTTCCTGGATGCAATCTCCTTCCTACGAA357GAGGCTTGTAACGAGCAAGGTATCCCCACCATGATCACTTGGTGCCATGG
RR2BD89TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV539111.1:325-344
CCTTCCTGGATGCAATCTCCTTCCTACGAA325GAGGCTTGTAACGAGCAAGGTATCCCCACCATGATCACTTGGTGCCATGG
RR3AL42TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV549470.1:377-396
CCTTCCTGGATGCAGTCTCCTTCCTACGAA377GAGGCTTGTAACGAGCAAGGTATCCCCACCATGATCACTCGGTGCCATGG
BR021178 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-012B11 5', mRNA sequence.
EX036534.1:33-52
CCTTCGTGGATGCAGGCCCCTTCCTACGAA33GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCACGG
BR036045 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-072G11 5', mRNA sequence.
EX051401.1:35-54
CCTTCGTGGATGCAGGCCCCTTCCTACGAA35GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCACGG
BR073631 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-027D09 5', mRNA sequence.
EX087341.1:490-509
CCTTCGTGGATGCAGGCCCCTTCCTACGAA490GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCACGG
BR079638 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-133A09 5', mRNA sequence.
EX093348.1:437-456
CCTTCGTGGATGCAGGCCCCTTCCTACGAA437GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCACGG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_512.
FX663390.1:266-285
CCTTCCTGGATGCAATCTCCTTCCTACGAA266GAGGCTTGTAACGAGCAAGGTATCCCCACCATGATCACTTGGTGCCATGG
TSA: Pachycladon cheesemanii 61545_218_2459_5_41.Pachleaf mRNA sequence.
JP985709.1:94-113
TGGATGCAATCGCCATCTTCGTTGTATGAA94GAGGCTTGTAACGAGCAAGGAATCCCTACGATGATCACATGGTGCCATGG
TSA: Pachycladon fastigiatum 92324_627_8155_7_41.Pafaleaf mRNA sequence.
JR032160.1:503-522
TGGATGCAATCGCCATCTTCGTTGTATGAA503GAGGCTTGTAACGAGCAAGGAATCCCTACGATGATCACATGGTGCCATGG
TSA: Raphanus sativus RS28150 mRNA sequence.
JT812697.1:73-92
CCTTCCTGGATGCAATCTCCTTCCTACGAA73GAGGCTTGTAACGAGCAAGGTATCCCCACCATGATCACTTGGTGCCATGG
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:12776513-12776532
CCTTCGTGGATGCAGGCCCCTTCCTACGAA12776513GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Brassica rapa genome, scaffold: A08.
LR031575.1:12613565-12613584
CCTTCGTGGATGCAGGCCCCTTCCTACGAA12613565GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:21627902-21627921
CCTTCTTGGATGCAGGCCCCTTCCTACGAA21627902GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:15309943-15309962
CCTTCCTGGATGCAATCTCCTTCCTACGAA15309943GAGGCTTGTAACGAGCAAGGTATCCCCACCATGATCACTTGGTGCCATGG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:18431147-18431166
CCTTCGTGGATGCAGGCCCCTTCCTACGAA18431147GAGGCTTGTAACGAGCAAGGCATCCCCACCATGATCACTTGGTGCCATGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTTGCTCGTTACAAGCCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTGCTCGTTACAAGCCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.451 | 0.442 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTGCTCGTTACAAGCCTC&k=0&no_gap=0&offset=0&limit=50
2.088 | 1.637 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGCTTGTAACGAGCAAGG&k=0&no_gap=0&offset=0&limit=29
2.116 | 0.028 | cgi_end;

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