GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Arvicola amphibius genome assembly, chromosome: 1.
LR862380.1:80403693-80403712

TACCACATGGGGAACCGCTTGAGGCTTGGT80403693CCTTGGGCTCTTTCTCCTTCCCGAAGAAGGTAAACTTGGGTAAGTCCCTG

Avena sativa genome assembly, chromosome: 2C.
OU342386.1:111422309-111422328

GTTCCATGTCTTCATCCATGTCGCTTGATT111422309CCTTGGGCTCTTTCTCCTTCTTCCCTTTGCCCTTTCCGTGGGGTCTATTT

Avena sativa genome assembly, chromosome: 7C.
OU342391.1:297276132-297276151

GGTCCACGTCTTCATCCATATCGCTTGATT297276132CCTTGGGCTCTTTCTCCTTCTTCTTCCCTTTGCCCTTTCCGCGAGGTCTG

Avena eriantha genome assembly, chromosome: 6C.
OU342745.1:128162969-128162988

GGTCCGTGTCCTCATCCATATCACTTGATT128162969CCTTGGGCTCTTTCTCCTTCTTCCTCCCTTTGCCCTTTCCGCGAGGTCTG

Avena eriantha genome assembly, chromosome: 7C.
OU342746.1:94653923-94653942

GGTCCATGTCCTCATCCATATCACTTGATT94653923CCTTGGGCTCTTTCTCCTTCTTCTTCCCTTTGCGTTTTCCACGGGGTCTG

Avena sativa genome assembly, chromosome: 9.
OV702287.1:122794509-122794528

GTTCCATGTCTTCATCCATGTCGCTTGATT122794509CCTTGGGCTCTTTCTCCTTCTTCCCTTTGCCCTTTCCGTGGGGTCTATTT

Avena sativa genome assembly, chromosome: 14.
OV702292.1:320824042-320824061

GGTCCACGTCTTCATCCATATCGCTTGATT320824042CCTTGGGCTCTTTCTCCTTCTTCTTCCCTTTGCCCTTTCCGCGAGGTCTG

Mus musculus BAC clone RP24-104B17 from chromosome 9, complete sequence.
AC109831.5:23756-23775

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23756GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus BAC clone RP23-252J6 from chromosome 9, complete sequence.
AC161424.3:208957-208976

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA208957GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OW971566.1:23521257-23521276

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23521257GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OW971583.1:23572062-23572081

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23572062GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OW971604.1:23423214-23423233

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23423214GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus domesticus genome assembly, chromosome: 9.
OW971630.1:23087494-23087513

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23087494GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OW971646.1:23559480-23559499

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23559480GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus molossinus genome assembly, chromosome: 9.
OW971668.1:23748298-23748317

CTGTGTTTTTTCTTTCCTTCTCCCACTCCA23748298GAAGGAGAAAGAGCCCAAGGGAAAAAAAAGAATTTAAAGAAACAATAAAT

Mus spretus genome assembly, chromosome: 9.
OW971688.1:23920770-23920789

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23920770GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OW971717.1:23900812-23900831

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23900812GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OW971730.1:23611909-23611928

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23611909GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OW971751.1:23425330-23425349

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23425330GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus musculus genome assembly, chromosome: 9.
OW971772.1:23634837-23634856

CTGTGTTTTTTCTTTCCTTCTCCCACTCCA23634837GAAGGAGAAAGAGCCCAAGGGAAAAAAAAGAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OW971793.1:23604100-23604119

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23604100GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OW971814.1:23618007-23618026

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23618007GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus castaneus genome assembly, chromosome: 9.
OW971843.1:23510119-23510138

CTGTGTTTTTTCTTTCCTTCTCCCACTCCA23510119GAAGGAGAAAGAGCCCAAGGGAAAAAAAAAGAATTTAAAGAAACAATAAA

Mus musculus genome assembly, chromosome: 9.
OW971860.1:23535940-23535959

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA23535940GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OX389803.1:24030983-24031002

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA24030983GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OX390155.1:24017882-24017901

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA24017882GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Mus musculus genome assembly, chromosome: 9.
OX439025.1:31031624-31031643

CTGTGTTCTTTCTTTCCTTCTCCCACTCCA31031624GAAGGAGAAAGAGCCCAAGGGAAAAAAAATAATTTAAAGAAACAATAAAT

Pollachius pollachius genome assembly, chromosome: 13.
OX465136.1:11452018-11452037

TGAAAAGGATGATGATGATGGTGAAGAGGA11452018GAAGGAGAAAGAGCCCAAGGCCACGCAGGGAAAAAAGAAAGTGGATTTGC

Porphyra yezoensis cDNA, clone:PF025f08_r, 5'end.
AU188412.1:392-411

GCCGCCGCCCGCGCCGGCGCCGACGCCGGC392GAAGGAGAAAGAGCCCAAGGCGGACGGCGCCCCCGACTCGGCGGCCAAGC

Porphyra yezoensis cDNA, clone:PF031h05_r, 5'end.
AU188903.1:388-407

GCCGCCGCCCGCGCCGGCGCCGACGCCGGC388GAAGGAGAAAGAGCCCAAGGCGGACGGCGCCCCCGACTCGGCGGCCAAGC

Neopyropia yezoensis NyHSP110 mRNA for HSP110 protein, complete cds.
LC764587.1:2970-2989

GCCGCCGCCCGCGCCGGCGCCGACGCCGGC2970GAAGGAGAAAGAGCCCAAGGCGGACGGCGCCCCCGACTCGGCGGCCAAGC

Avena insularis genome assembly, chromosome: 2C.
OU342339.1:107907583-107907602

AAATAGACCCCACGGAAAGGGCAAAGGGAA107907583GAAGGAGAAAGAGCCCAAGGAATCAAGCGACATGGATGAAGACATGGAAC

Avena insularis genome assembly, chromosome: 2C.
OU342339.1:183988286-183988305

TAGACCCTGCAGAAAGGGCAAAGGGAAGAA183988286GAAGGAGAAAGAGCCCAAGGAATCAAGCGACATGGATGAAGATGTGGACC

Avena insularis genome assembly, chromosome: 4C.
OU342341.1:380167907-380167926

CCGACCCCGTGGAAAAGGCAAAGGGAAGAA380167907GAAGGAGAAAGAGCCCAAGGAATCAAGTGATATGGGTGGAGACGTGGAAC

Avena insularis genome assembly, chromosome: 5C.
OU342342.1:253683007-253683026

CAGACCCCGCGGAATGGGCAAAGGGAAGAA253683007GAAGGAGAAAGAGCCCAAGGAATCAAGTGATATGGATGAGTATGTGGACC

Avena insularis genome assembly, chromosome: 7C.
OU342344.1:279336420-279336439

CAGACCTCGCGGAAAGGGCAAAGGGAAGAA279336420GAAGGAGAAAGAGCCCAAGGAATCAAGCGATATGGATGAAGACGTGGACC

Avena sativa genome assembly, chromosome: 2C.
OU342386.1:170629200-170629219

TAGACCCTGCAGAAAGGGCAAAGGGAAGAA170629200GAAGGAGAAAGAGCCCAAGGAATCAAGCGACATGGATGAAGATGTGGACC

Avena sativa genome assembly, chromosome: 4C.
OU342388.1:446350553-446350572

CAGACCCCACGGAAAGGGCAAGAGGAAGAA446350553GAAGGAGAAAGAGCCCAAGGAATCAAGTGATATGGATGAAGACGTGGACC

Avena sativa genome assembly, chromosome: 5C.
OU342389.1:254847697-254847716

GAACAGACCCCGCGGAAAGGGAAAATGGAA254847697GAAGGAGAAAGAGCCCAAGGAATCAAGTGATATGGATGAGTATGTGGACC

Avena eriantha genome assembly, chromosome: 1C.
OU342740.1:161996922-161996941

CAGACCCCACGGAAAGGGCAAAGGGAAGAA161996922GAAGGAGAAAGAGCCCAAGGAATCAAGTGATATGGACGAGGACATGGACC

Avena eriantha genome assembly, chromosome: 5C.
OU342744.1:303906229-303906248

TAGACCCCACGGAAAGGGCAAAGGGAAGAA303906229GAAGGAGAAAGAGCCCAAGGAATCAAGCGATATGGATGAAGACATGGACC

Avena sativa genome assembly, chromosome: 9.
OV702287.1:187461069-187461088

TAGACCCTGCAGAAAGGGCAAAGGGAAGAA187461069GAAGGAGAAAGAGCCCAAGGAATCAAGCGACATGGATGAAGATGTGGACC

Avena sativa genome assembly, chromosome: 11.
OV702289.1:464724351-464724370

CAGACCCCACGGAAAGGGCAAGAGGAAGAA464724351GAAGGAGAAAGAGCCCAAGGAATCAAGTGATATGGATGAAGACGTGGACC

Avena sativa genome assembly, chromosome: 12.
OV702290.1:265744830-265744849

GAACAGACCCCGCGGAAAGGGAAAATGGAA265744830GAAGGAGAAAGAGCCCAAGGAATCAAGTGATATGGATGAGTATGTGGACC

Erynnis tages genome assembly, chromosome: 2.
LR990073.1:858775-858794

ATCATCAATCGATTACACCAAAGCAGAGAA858775GAAGGAGAAAGAGCCCAAGGAATCTAATGATGACCTGGGCTTCGATTTCT

Rhagium mordax genome assembly, chromosome: 8.
OY796663.1:52806478-52806497

GTCTATTTTGAAGAAGTTGTCGGAAGACAC52806478GAAGGAGAAAGAGCCCAAGGAACCCGCAATGCCGGAGAAGATAGACTCTA

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Debug Info:

0.008 | 0.008 | search_start;
0.104 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTGGGCTCTTTCTCCTTC&k=0&no_gap=0&offset=0&limit=50
0.178 | 0.074 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGGAGAAAGAGCCCAAGG&k=0&no_gap=0&offset=0&limit=43
0.203 | 0.025 | cgi_end;

Summary:

Results:

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