GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:04:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Epithemia pelagica genome assembly, chromosome: 6.
OX337233.1:2845627-2845646
AGAAGTGTCATCGTCTTCTCACGGACACTT2845627CCTTGTTTGCGGTCAAGATTCTCGCAATGTTGATGCTTCAAAACCACCCG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392563.1:22027142-22027161
TACTTCTTTGAGTACTAGAATGGTAGAAGC22027142CCTTGTTTGCGGTCAAGATTGGATGCGTCAAACCAATACACTTATTACTC
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 6.
CP125978.1:53931056-53931075
GAATGCATCCCAGGCAACGGTGACAAGCTC53931056AATCTTGACCGCAAACAAGGCCCCATGTCAAGAGCCGGTGCAATGGATCG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2475755-2475774
TCAAGAAAACAATTGTATACTATTAAGAAA2475755AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2433858-2433877
TCAAGAAAACAATTGTATACTATTAAGAAA2433858AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2533486-2533505
TCAAGAAAACAATTGTATACTATTAAGAAA2533486AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2630743-2630762
TCAAGAAAACAATTGTATACTATTAAGAAA2630743AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2473228-2473247
TCAAGAAAACAATTGTATACTATTAAGAAA2473228AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2500288-2500307
TCAAGAAAACAATTGTATACTATTAAGAAA2500288AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2588560-2588579
TCAAGAAAACAATTGTATACTATTAAGAAA2588560AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2581889-2581908
TCAAGAAAACAATTGTATACTATTAAGAAA2581889AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2637398-2637417
TCAAGAAAACAATTGTATACTATTAAGAAA2637398AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2677349-2677368
TCAAGAAAACAATTGTATACTATTAAGAAA2677349AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2652548-2652567
TCAAGAAAACAATTGTATACTATTAAGAAA2652548AATCTTGACCGCAAACAAGGGAAAGTAGAATCCTAACTTAACCAAATCTA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392547.1:46289845-46289864
TAGTAATAGGTGTATTGGTTTGACGCATCC46289845AATCTTGACCGCAAACAAGGGCTTCTACCATTCTAGTACTCAAAGAAGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 3.
OX392549.1:1035263-1035282
TAGTAATAAGTGTATTGGTTTGACGCATCC1035263AATCTTGACCGCAAACAAGGGCTTCTACCATTCTAGTACTCAAAGAAGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392552.1:32001022-32001041
TAGTAATAAGTGTATTGGTTTGACGCATCC32001022AATCTTGACCGCAAACAAGGGCTTCTACCATTCTAGTACTCAAAGAAGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392552.1:32006083-32006102
TAGTAATAAGTGTATTGGTTTGACGCATCC32006083AATCTTGACCGCAAACAAGGGCTTCTACCATTCTAGTACTCAAAGAAGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:45755820-45755839
TAGTAATAGGTGTATTGGTTTGACGCATCC45755820AATCTTGACCGCAAACAAGGGCTTCTACCATTCTAGTACTCAAAGAAGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 3.
OX392558.1:1009063-1009082
TAGTAATAAGTGTATTGGTTTGACGCATCC1009063AATCTTGACCGCAAACAAGGGCTTCTACCATTCTAGTACTCAAAGAAGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392561.1:32038958-32038977
TAGTAATAAGTGTATTGGTTTGACGCATCC32038958AATCTTGACCGCAAACAAGGGCTTCTACCATTCTAGTACTCAAAGAAGTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392561.1:32044015-32044034
TAGTAATAAGTGTATTGGTTTGACGCATCC32044015AATCTTGACCGCAAACAAGGGCTTCTACCATTCTAGTACTCAAAGAAGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTTGTTTGCGGTCAAGATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTGTTTGCGGTCAAGATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTGTTTGCGGTCAAGATT&k=0&no_gap=0&offset=0&limit=50
0.114 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=AATCTTGACCGCAAACAAGG&k=0&no_gap=0&offset=0&limit=48
0.128 | 0.013 | cgi_end;

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