GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:00:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Porphyra yezoensis cDNA, clone:PF030f06_r, 5'end.
AU188808.1:111-130
TCTCCCCTTTCTTCCGCATTCCTCCCGTCT111CCTTTCGCACTCTTTTGTCCAGTCCAGCAGCGGCTACCGCGCCGGTCTGG
Porphyra yezoensis cDNA, clone:PF039a04_r, 5'end.
AU189427.1:40-59
TCTCCCCTTTCTTCCGCATTCCTCCCGTCT40CCTTTCGCACTCTTTTGTCCAGTCCAGCAGCGGCTACCGCGCCGGTCTGG
Porphyra yezoensis cDNA clone:PM056a09_r, 5' end.
AV435340.1:127-146
TCTCCCCTTTCTTCCGCATTCCTCCCGTCT127CCTTTCGCACTCTTTTGTCCAGTCCAGCAGCGGCTACCGCGCCGGTCTGG
Antiaris toxicaria isolate JCLG002 chromosome 2.
CP141154.1:87391678-87391697
CGTTAACCACTTTTTCAATTCTCAAAAGCT87391678CCTTTCGCACTCTTTTGTCCATTCATACTTCCTCTCCTTGGATGTAAGAG
Antiaris toxicaria isolate JCLG002 chromosome 2.
CP141167.1:76243507-76243526
CGTTAACCACTTTTTCAATTCTCAAAAGCT76243507CCTTTCGCACTCTTTTGTCCATTCATACTTCCTCTCCTTGGATGTAAGAG
Antiaris toxicaria isolate JCLG002 chromosome 5.
CP141170.1:5536342-5536361
CGTTGACTGCTTTTTCAGTTCTCGAAAGCT5536342CCTTTCGCACTCTTTTGTCCATTCATACTTCCTCTCTTTGCGTGTAAAAG
Ectemnius continuus genome assembly, chromosome: 14.
OU342868.1:7753482-7753501
TCTTGGAAGGTAATCCAGGTGTTATGATTT7753482CCTTTCGCACTCTTTTGTCCACCGAATGCCATACTGTAATGGGCATTTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTTTCGCACTCTTTTGTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTTCGCACTCTTTTGTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.127 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTTCGCACTCTTTTGTCC&k=0&no_gap=0&offset=0&limit=50
0.146 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=GGACAAAAGAGTGCGAAAGG&k=0&no_gap=0&offset=0&limit=43
0.146 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).