GGGenome | Results

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2025-04-05 17:37:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Homo sapiens clone RP11-617C4, WORKING DRAFT SEQUENCE, 36 unordered pieces.
AC084100.2:83282-83302

CTGTCCCTTCACTCTAGAAATGTCCCGAGG83282CCTTTGCTCCCTTCACCTCTCTCTCCACAAACTGTACTTGATTTTCTTTTC

Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
AP015037.1:22110455-22110475

ACTAATGGGTGTTGCTCCCTCCACCTCCAT22110455CCTTTGCTCCCTTCACCTCTCCATTCCACTTTTATCCCTCCTTTTATTTTT

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392547.1:27163880-27163900

CTTTTCATAGATTTTTTTTTCCAGAGATTC27163880CCTTTGCTCCCTTCACCTCTCTCCAATAACAGACATATATATATATATATA

Human DNA sequence from clone RP13-129E14 on chromosome 9.
AL645768.7:13924-13944

GAAAAGAAAATCAAGTACAGTTTGTGGAGA13924GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

Homo sapiens DNA, chromosome 9, nearly complete genome.
AP023469.1:135332530-135332550

GAAAAGAAAATCAAGTACAGTTTGTGGAGA135332530GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

Homo sapiens isolate CHM13 chromosome 9.
CP068269.2:146966425-146966445

GAAAAGAAAATCAAGTACAGTTTGTGGAGA146966425GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

Homo sapiens isolate NA24385 chromosome 9.
CP139512.1:140092812-140092832

GAAAAGAAAATCAAGTACAGTTTGTGGAGA140092812GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

Homo sapiens isolate NA24385 chromosome 9.
CP139535.1:127804294-127804314

GAAAAGAAAATCAAGTACAGTTTGTGGAGA127804294GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

JP 2008504803-A/36390: CELL-TYPE-SPECIFIC PATTERNS OF GENE EXPRESSION.
FW548898.1:103470-103490

GAAAAGAAAATCAAGTACAGTTTGTGGAGA103470GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

JP 2008504803-A/37716: CELL-TYPE-SPECIFIC PATTERNS OF GENE EXPRESSION.
FW550224.1:103470-103490

GAAAAGAAAATCAAGTACAGTTTGTGGAGA103470GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

JP 2008504803-A/37717: CELL-TYPE-SPECIFIC PATTERNS OF GENE EXPRESSION.
FW550225.1:103470-103490

GAAAAGAAAATCAAGTACAGTTTGTGGAGA103470GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

Sequence 181 from Patent WO2009074968.
HB442312.1:103497-103517

GAAAAGAAAATCAAGTACAGTTTGTGGAGA103497GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

JP 2011229522-A/36390: CELL-TYPE-SPECIFIC PATTERNS OF GENE EXPRESSION.
HW026112.1:103470-103490

GAAAAGAAAATCAAGTACAGTTTGTGGAGA103470GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

JP 2011229522-A/37716: CELL-TYPE-SPECIFIC PATTERNS OF GENE EXPRESSION.
HW027438.1:103470-103490

GAAAAGAAAATCAAGTACAGTTTGTGGAGA103470GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

JP 2011229522-A/37717: CELL-TYPE-SPECIFIC PATTERNS OF GENE EXPRESSION.
HW027439.1:103470-103490

GAAAAGAAAATCAAGTACAGTTTGTGGAGA103470GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

JP 2014500723-A/13109: Polycomb-Associated Non-Coding RNAs.
LF205606.1:103867-103887

GAAAAGAAAATCAAGTACAGTTTGTGGAGA103867GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

JP 2018138019-A/13109: Polycomb-Associated Non-Coding RNAs.
MA441183.1:103867-103887

GAAAAGAAAATCAAGTACAGTTTGTGGAGA103867GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

Sequence 13109 from patent US 10119144.
MM233950.1:103867-103887

GAAAAGAAAATCAAGTACAGTTTGTGGAGA103867GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

Sequence 47825 from patent US 11001841.
MX786330.1:17-37

GTACAGTTTGTGGAGA17GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

Eukaryotic synthetic construct chromosome 9.
CP034508.1:137627121-137627141

GAAAAGAAAATCAAGTACAGTTTGTGGAGA137627121GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

Eukaryotic synthetic construct chromosome 9.
CP034533.1:137627121-137627141

GAAAAGAAAATCAAGTACAGTTTGTGGAGA137627121GAGAGGTGAAGGGAGCAAAGGCCTCGGGACATTTCTAGAGTGAAGGGACAG

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:28953606-28953626

TATATATATATATATATGTCTGTTATTGGA28953606GAGAGGTGAAGGGAGCAAAGGGAATCTCTGGAAAAAAAAATCTATGAAAAG

Triticum timopheevii genome assembly, chromosome: 2At.
OY997263.1:442446877-442446897

GTATATGGGTCTTATTGGGCCATAGTGGGA442446877GAGAGGTGAAGGGAGCAAAGGAGGGGGCGTGCCCCCCACGCCCAATCCGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCTTTGCTCCCTTCACCTCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTTGCTCCCTTCACCTCTC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTTGCTCCCTTCACCTCTC&k=0&no_gap=0&offset=0&limit=50
0.460 | 0.355 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAGGTGAAGGGAGCAAAGG&k=0&no_gap=0&offset=0&limit=47
0.473 | 0.013 | cgi_end;

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