GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 22:25:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sylvilagus floridanus genome assembly, chromosome: 21.
OX463243.1:65893979-65893997
CTCCATTTCTCACGTCCTGGCTTTGCACAC65893979CCTTTTCACAGTTTGCTATACTATTTGTTCCCAGTGTTACTCAGCAAAC
Gallus gallus breed Huxu chromosome 3.
CP100557.1:62454605-62454623
TAGCCTCTGGACACTTACGATTTCTAATCC62454605CCTTTTCACAGTTTGCTATGAAGATGTTATGAATTAAAGACCAGGATAT
Mobula hypostoma genome assembly, chromosome: 26.
OY992619.1:11426263-11426281
CACTTTAACTATCTATATCCCTCTCTGTAT11426263CCTTTTCACAGTTTGCTATTTATCACCAGAATCCAATTTGGTTACAAAA
AUAC-aay46b10.b1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.
ED141309.1:644-662
ACAGGGCTGCCATTCTCGCTGGAACTTCTC644CCTTTTCACAGTTTGCTATGAGTGAGGAACATTTTCGTCGACCGTTGCA
AUAC-aaa29c04.b1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.
ED222304.1:220-238
ACAGGGCTGCCATTCTCGCTGGAACTTCTC220CCTTTTCACAGTTTGCTATGAGTGAGGAACATTTTCGTCGACCGTTGCA
Citrus reshni microsatellite DNA, locus mCrCIR07D06.
FR677581.1:136-154
TAAGAATAAGAAGCATCTCTTTTCTCCCAT136CCTTTTCACAGTTTGCTATTACGTCAAATAGGATTCATGTTTAGTGATC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR812265.1:408948869-408948887
ATATTAAAGAAAAAAATAAACTTTCAGCTG408948869CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828112.1:381114718-381114736
ATATTAAAGAAAAAAATAAACTTTCAGCTG381114718CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828136.1:411030999-411031017
ATATTAAAGAAAAAAATAAACTTTCAGCTG411030999CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828143.1:415555349-415555367
ATATTAAAGAAAAAAATAAACTTTCAGCTG415555349CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828157.1:374070056-374070074
ATATTAAAGAAAAAAATAAACTTTCAGCTG374070056CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828164.1:398409993-398410011
ATATTAAAGAAAAAAATAAACTTTCAGCTG398409993CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828178.1:393807641-393807659
ATATTAAAGAAAAAAATAAACTTTCAGCTG393807641CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828185.1:392799544-392799562
ATATTAAAGAAAAAAATAAACTTTCAGCTG392799544CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828277.1:402139368-402139386
ATATTAAAGAAAAAAATAAACTTTCAGCTG402139368CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OU015705.1:397752359-397752377
ATATTAAAGAAAAAAATAAACTTTCAGCTG397752359CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX459913.1:392700104-392700122
ATATTAAAGAAAAAAATAAACTTTCAGCTG392700104CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX459927.1:393890330-393890348
ATATTAAAGAAAAAAATAAACTTTCAGCTG393890330CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX459934.1:393761782-393761800
ATATTAAAGAAAAAAATAAACTTTCAGCTG393761782CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX459995.1:387015665-387015683
ATATTAAAGAAAAAAATAAACTTTCAGCTG387015665CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
OX460002.1:389255676-389255694
ATATTAAAGAAAAAAATAAACTTTCAGCTG389255676CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460016.1:392387458-392387476
ATATTAAAGAAAAAAATAAACTTTCAGCTG392387458CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460023.1:391080772-391080790
ATATTAAAGAAAAAAATAAACTTTCAGCTG391080772CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX460044.1:386851749-386851767
ATATTAAAGAAAAAAATAAACTTTCAGCTG386851749CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460058.1:389257196-389257214
ATATTAAAGAAAAAAATAAACTTTCAGCTG389257196CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460072.1:393606870-393606888
ATATTAAAGAAAAAAATAAACTTTCAGCTG393606870CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX460086.1:383101514-383101532
ATATTAAAGAAAAAAATAAACTTTCAGCTG383101514CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX460093.1:390883037-390883055
ATATTAAAGAAAAAAATAAACTTTCAGCTG390883037CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460114.1:388569392-388569410
ATATTAAAGAAAAAAATAAACTTTCAGCTG388569392CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460128.1:386157692-386157710
ATATTAAAGAAAAAAATAAACTTTCAGCTG386157692CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460135.1:391583149-391583167
ATATTAAAGAAAAAAATAAACTTTCAGCTG391583149CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460163.1:389032689-389032707
ATATTAAAGAAAAAAATAAACTTTCAGCTG389032689CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460170.1:398470911-398470929
ATATTAAAGAAAAAAATAAACTTTCAGCTG398470911CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460205.1:386864801-386864819
ATATTAAAGAAAAAAATAAACTTTCAGCTG386864801CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460212.1:386333890-386333908
ATATTAAAGAAAAAAATAAACTTTCAGCTG386333890CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460219.1:389773803-389773821
ATATTAAAGAAAAAAATAAACTTTCAGCTG389773803CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460247.1:386440335-386440353
ATATTAAAGAAAAAAATAAACTTTCAGCTG386440335CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460254.1:388642228-388642246
ATATTAAAGAAAAAAATAAACTTTCAGCTG388642228CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460268.1:385507528-385507546
ATATTAAAGAAAAAAATAAACTTTCAGCTG385507528CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460282.1:389403445-389403463
ATATTAAAGAAAAAAATAAACTTTCAGCTG389403445CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460296.1:389444755-389444773
ATATTAAAGAAAAAAATAAACTTTCAGCTG389444755CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460303.1:389131972-389131990
ATATTAAAGAAAAAAATAAACTTTCAGCTG389131972CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460310.1:388648249-388648267
ATATTAAAGAAAAAAATAAACTTTCAGCTG388648249CCTTTTCACAGTTTGCTATTTCATTTTTCTGATCACTAACAATTCAAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX590738.1:393199467-393199485
ATATTAAAGAAAAAAATAAACTTTCAGCTG393199467CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX590745.1:399964752-399964770
ATATTAAAGAAAAAAATAAACTTTCAGCTG399964752CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX590752.1:403397304-403397322
ATATTAAAGAAAAAAATAAACTTTCAGCTG403397304CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare f. agriocrithon genome assembly, chromosome: 5H.
OX590759.1:389933501-389933519
ATATTAAAGAAAAAAATAAACTTTCAGCTG389933501CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX590766.1:386743089-386743107
ATATTAAAGAAAAAAATAAACTTTCAGCTG386743089CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX638657.1:391406561-391406579
ATATTAAAGAAAAAAATAAACTTTCAGCTG391406561CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX638746.1:390343195-390343213
ATATTAAAGAAAAAAATAAACTTTCAGCTG390343195CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX638767.1:391314507-391314525
ATATTAAAGAAAAAAATAAACTTTCAGCTG391314507CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX638774.1:386753269-386753287
ATATTAAAGAAAAAAATAAACTTTCAGCTG386753269CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX638781.1:396900825-396900843
ATATTAAAGAAAAAAATAAACTTTCAGCTG396900825CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX638788.1:389157567-389157585
ATATTAAAGAAAAAAATAAACTTTCAGCTG389157567CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX638802.1:383435358-383435376
ATATTAAAGAAAAAAATAAACTTTCAGCTG383435358CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX638809.1:389248604-389248622
ATATTAAAGAAAAAAATAAACTTTCAGCTG389248604CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare genome assembly, chromosome: 5H.
OX638823.1:390889622-390889640
ATATTAAAGAAAAAAATAAACTTTCAGCTG390889622CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX638872.1:389212552-389212570
ATATTAAAGAAAAAAATAAACTTTCAGCTG389212552CCTTTTCACAGTTTGCTATTTCATTTTTTCTGATCACTAACAATTCAAA
Citrus sinensis genome assembly, chromosome: 8.
OY754325.1:23466116-23466134
CAAGAATAAGAAGCATCTCTTTTCTCCCAT23466116CCTTTTCACAGTTTGCTATTACATCAAATAGGATTCATGTTTAGTGATC
Oppiella nova.
OC915872.1:17715-17733
TTATTTTTAATAGTTTAAACGTTTTTATGT17715CCTTTTCACAGTTTGCTATCGGCGATCACTCGGAATCTGTCGGAAAACA
Pilophorus perplexus genome assembly, chromosome: 1.
OY037008.1:11532776-11532794
GAATAGGGTTTGGAGTTCTGACTTGGTGTT11532776CCTTTTCACAGTTTGCTATTGTGAGGCGAAAAAAATCGGAATCAAGGGG
Ormia ochracea genome assembly, chromosome: 5.
OY727109.1:12457766-12457784
TAATTATTGTGAACTAAAAACTTATTCAAA12457766CCTTTTCACAGTTTGCTATTTATTTTACTAATAACTACATAGTTAAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTTTTCACAGTTTGCTAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTTTCACAGTTTGCTAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.443 | 0.434 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTTTCACAGTTTGCTAT&k=0&no_gap=0&offset=0&limit=50
0.617 | 0.174 | search_minus_done; http://172.18.8.135:50400/match?q=ATAGCAAACTGTGAAAAGG&k=0&no_gap=0&offset=0&limit=0
0.617 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).