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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:00:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Oryzias latipes strain HSOK chromosome 17.
CP020637.1:24482263-24482282
GTTTTGTGTGTCAAACACAAACCCGAAAAA24482263CCTTTTCCCAAACCCAAAATATGAAATGTTGTAGAATCTTACACCCCACT
Oryzias latipes strain Hd-rR chromosome 17 sequence.
CP020681.1:23678023-23678042
TGTTTTGTGTGTCAAACACAAACCGAAAAA23678023CCTTTTCCCAAACCCAAAATATGAAATGTTGTAGAATCTTACACCCCATT
Gobio gobio genome assembly, chromosome: 13.
OX442386.1:32762014-32762033
TGTCTTTATGATTTAATTTAAGGGTTTTAT32762014CCTTTTCCCAAACCCAAAATTTTTATCTAAAAACGGAAATCTATCATAAA
Melanostigma gelatinosum genome assembly, chromosome: 12.
OX456509.1:9606618-9606637
CTTCTGTAGTTATTTCAAGACAAACCATGA9606618CCTTTTCCCAAACCCAAAATAGTTGTGTTGCCAAAACCTAAAAACGTTGT
Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630214N19, 5' end partial sequence.
BY185951.1:326-345
AAATTGTTTCCCTGGGGGGGGCAAGGCTTT326CCTTTTCCCAAACCCAAAATGGGGCTTAAAAGGGCCNCTGGTTATTGGTT
CBTH7901.g1_I08.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusilla cDNA, mRNA sequence.
EY141868.1:225-244
TTAAAAAGCATTCCCAGGGAAAATCCCCCC225CCTTTTCCCAAACCCAAAATTTCCAAATTTCTTTTTTCCCCAAAAAATTT
TSA: Picrorhiza kurrooa 42915_scaffold19333_140.2_0 mRNA sequence.
JR821044.1:110-129
ACATCCACTAACAAACAATCTTCCAATCTC110CCTTTTCCCAAACCCAAAATCAAACATATCCAATTCCAACACTCCCCTCT
TSA: Capsicum annuum MGMT_Contig56, mRNA sequence.
JW050300.1:1214-1233
AAACAACCCAACCCCACCTTCCCAAATGCT1214CCTTTTCCCAAACCCAAAATCACTCAATGGACGCATAGTTCGCTTCCATA
Lotus japonicus genomic DNA, clone:LjT44J22, TM1071.
AP007787.1:19060-19079
GCTTGAAAAAAGAAACCTGGGGATTGTAAA19060CCTTTTCCCAAACCCAAAATAAAAAATAAGCGTTCTTTGGAACAATTAAA
Picrorhiza kurrooa geranyl diphosphate synthase mRNA, complete cds.
AY866498.1:242-261
ACATCCACTAACAAACAATCTTCCAATCTC242CCTTTTCCCAAACCCAAAATCAAACATATCCAATTCCAACACTCCCCTCT
Thalassiosira pseudonana CCMP1335 chromosome 7, complete sequence.
CP001160.1:1916807-1916826
ATTAACGTTAACCCTAACATACGAGGATAT1916807CCTTTTCCCAAACCCAAAATCTTTTAAGGCTCAAGAACCTCAATCTTCTT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 3.
CP124717.1:69423208-69423227
AAACAACCCAACCCCACCTTCCCAAATGCT69423208CCTTTTCCCAAACCCAAAATCACTCAATGGACGCATAGTTCGCTTCCATA
Mytilus edulis genome assembly, chromosome: 11.
OY782966.1:21283391-21283410
ATACATAATGAACACGGAACACAATCACAT21283391CCTTTTCCCAAACCCAAAATAACATCCATATCGTCAGGTATAAGGGTTAT
Rana temporaria genome assembly, chromosome: 4.
LR991683.1:262046709-262046728
GAGCAGCAGAACCCTTGTAAGCAATGGCAG262046709ATTTTGGGTTTGGGAAAAGGTGACCCATACGTGTTACCAAAAGCATAGTC
KR 1020160038243-A/277: Single nucleotide polymorphism marker set for marker-assisted breeding in Capsicum and uses thereof.
LG144984.1:11-30
CCATTGAGTG11ATTTTGGGTTTGGGAAAAGGAGCATTTGGGAAGGTGGGGTTGGGTTGTTT
JH02014F10 JH-201 Capsicum annuum cDNA 5', mRNA sequence.
CO776559.1:234-253
TATGGAAGCGAACTATGCGTCCATTGAGTG234ATTTTGGGTTTGGGAAAAGGAGCATTTGGGAAGGTGGGGTTGGGTTGTTT
KS25004D11 KS25 Capsicum annuum cDNA, mRNA sequence.
GD124181.1:415-434
TATGGAAGCGAACTATGCGTCCATTGAGTG415ATTTTGGGTTTGGGAAAAGGAGCATTTGGGAAGGTGGGGTTGGGTTGTTT
Capsicum annuum Takanotsume DNA, chromosome 2, sequence.
AP026697.1:156611605-156611624
TATGGAAGCGAACTATGCGTCCATTGAGTG156611605ATTTTGGGTTTGGGAAAAGGAGCATTTGGGAAGGTGGGGTTGGGTTGTTT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 2.
CP124730.1:157448028-157448047
TATGGAAGCGAACTATGCGTCCATTGAGTG157448028ATTTTGGGTTTGGGAAAAGGAGCATTTGGGAAGGTGGGGTTGGGTTGTTT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:46115971-46115990
TTTCAGTCTGCAACACTAAAAGAGGCTGCA46115971ATTTTGGGTTTGGGAAAAGGAGGCACAAGAAAGCAGATACAGAAAATTAC
Humulus lupulus genome assembly, chromosome: 1.
OY720647.1:139090680-139090699
TGGGATGAGTGTGGAGTGTGTATAAGCTTG139090680ATTTTGGGTTTGGGAAAAGGTTTGGACAAGTTTGGAGTTGAAATGGGAGG
Oscheius tipulae isolate CEW1 chromosome II.
CP059029.1:833981-834000
GCTTTGCGCAGCCTCTTCCCTTTCACGGCC833981ATTTTGGGTTTGGGAAAAGGGTCCCCCTGTTCGTTTTGCTCAGGTTTTGC
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 1.
HG994580.1:49692136-49692155
TAATTCTAAATATCAGCTGCTTGTTATATG49692136ATTTTGGGTTTGGGAAAAGGATTTACTGCTATAGAGAAGAGAACTTTCTA
Lepeophtheirus salmonis strain IoA-00 genome assembly, chromosome: 1.
LR794184.1:49692136-49692155
TAATTCTAAATATCAGCTGCTTGTTATATG49692136ATTTTGGGTTTGGGAAAAGGATTTACTGCTATAGAGAAGAGAACTTTCTA
Anisus vortex genome assembly, chromosome: 10.
OX421501.1:32700086-32700105
TGTAAAACATATGAAGCCACGAGCACATTT32700086ATTTTGGGTTTGGGAAAAGGGTGGGGGATGCATGTGAAACTTTAGTAATA
Dysmachus trigonus genome assembly, chromosome: 5.
OX454323.1:39846339-39846358
GGAAACAGTGAAATAATTTTGGAGGAATGC39846339ATTTTGGGTTTGGGAAAAGGTTTTAGACGAAAATTTTAGGATTTTTCCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTTTTCCCAAACCCAAAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTTTCCCAAACCCAAAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.377 | 0.368 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTTTCCCAAACCCAAAAT&k=0&no_gap=0&offset=0&limit=50
0.688 | 0.311 | search_minus_done; http://172.18.8.135:50400/match?q=ATTTTGGGTTTGGGAAAAGG&k=0&no_gap=0&offset=0&limit=37
0.697 | 0.009 | cgi_end;

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