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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 20:25:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Heterocephalus glaber genome assembly, chromosome: 16.
OX090924.1:29869365-29869385
TATTACTCTACCCATCATCCTTTTTTCATC29869365CCTTTTTCTTCCTCTTTTCCATTTTCCACAATCTCTCTCTTTGCCTATCAA
Meles meles genome assembly, chromosome: 10.
OV277451.1:16515863-16515883
TTTTCATTTCTGTTCATAAGAAGGGCTTGC16515863CCTTTTTCTTCCTCTTTTCCATGGTCTGGTCTTGACACGAAGATTATATGA
Cinclus cinclus genome assembly, chromosome: 1.
OY759677.1:64314072-64314092
TTGGAATGGAAAACTATGAAAATATGGATG64314072CCTTTTTCTTCCTCTTTTCCATCAGCTTCCAGCTGCTGAAATGCAGAGCTC
Sardina pilchardus genome assembly, chromosome: 3.
OY974088.1:28085182-28085202
CGCCGCGGCATTCATTTATTCCTTTCCCTC28085182CCTTTTTCTTCCTCTTTTCCAAATCAATTCCGTGGAAATCCACCACATATA
IGS-SCF-0106-L100478-0106-014-L16-sp6m IGS-SCF-0106 Bvu-KWS2320 BAC library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-0106-L100478-0106-014-L16, genomic survey sequence.
HN126197.1:39-59
CATTTAGATTCATTTTAGGCCATATAGTTT39CCTTTTTCTTCCTCTTTTCCATCATTTCTCACATTCTCATGTTTAGCATAT
IGS-SCF-0106-L110498-0106-047-I13Q-T7 IGS-SCF-0106 Bvu-KWS2320 BAC library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-0106-L110498-0106-047-I13Q, genomic survey sequence.
HN148158.1:83-103
CATTTAGATTCCTTTTAGGCCATATAGTTT83CCTTTTTCTTCCTCTTTTCCATCATTTCTCATATTCTCATGTTTAGCATTT
Cenchrus purpureus cultivar elephant grass chromosome A5.
CP053458.1:260260-260280
ACATATATGCTTAGCTTCTTCTTTTTTTTG260260CCTTTTTCTTCCTCTTTTCCAAAATAATAAAGTATGCTTCTTGTTCAAAAC
Gossypium rotundifolium isolate GPK201 chromosome 12.
CP106733.1:124842206-124842226
TGCCGAATTTCTCTCTTCCATTTTACTTTT124842206CCTTTTTCTTCCTCTTTTCCACTCTAGCCGAATCCTTTCTCTCTCATTTTG
Quercus dentata isolate Qdleaves-2020 chromosome 8.
CP116451.1:19843125-19843145
GGCCCCATTTGTCATCACAGTTACATAAAC19843125CCTTTTTCTTCCTCTTTTCCATTTAGGCAAGGGAAATTCTTTTAATTGGAA
Ligustrum vulgare genome assembly, chromosome: 2.
OY743169.1:37577480-37577500
CGACATGTTTGTTTTGTTGAGCATCTATTC37577480CCTTTTTCTTCCTCTTTTCCACTTCTTCCCTGTCTACACCGTCTCTAAAGT
Fusobacterium hominis strain NSJ-57 chromosome, complete genome.
CP060637.1:603451-603471
GTTTCGTCAAAACTAAAGAGACTATCCAAC603451CCTTTTTCTTCCTCTTTTCCAACAATATTTTCAACTGTTCTTTCTAGGAAA
Caenorhabditis nigoni strain JU1421 chromosome III.
CP115866.1:11921916-11921936
GCACCGTCAATCATTATACCTCTTTCTTAT11921916CCTTTTTCTTCCTCTTTTCCAATATTTTCTTCAACTTTCCTATAATTCATG
Bemisia tabaci genome assembly, chromosome: 6.
OU963867.1:8928954-8928974
TTCATCCGTTACTTCCTTCTCTCTTTCCTC8928954CCTTTTTCTTCCTCTTTTCCATGCGACCCCTACGCCCCCCTTCTGGATCCG
Montipora capitata genome assembly, chromosome: 4.
OX421448.1:16386876-16386896
ATAAAGGATAGTGAGAGAGTGTTTCCCTCA16386876CCTTTTTCTTCCTCTTTTCCATTTTATTTTATTTTAGCACAATTAATCTTT
Tridacna derasa genome assembly, chromosome: 3.
OY723416.1:66381579-66381599
TTCAAAAAATGACCCACTCAGTGCCGATTA66381579CCTTTTTCTTCCTCTTTTCCAACGATGTTTTAACCCTTTACCAAACGATCC
Salticus scenicus genome assembly, chromosome: 6.
OZ005653.1:36959460-36959480
CTACTTTCAGCTTTGGCTGGACCTGGTAGC36959460CCTTTTTCTTCCTCTTTTCCATTTCCTTTTCTAATAAACTTCTTTTTTTGG
Salticus scenicus genome assembly, chromosome: 15.
OZ005662.1:90393197-90393217
CTACTTTCAGGTTTGGCTGGACCTGGTAGT90393197CCTTTTTCTTCCTCTTTTCCATTTCCTTTTCTTATAAACTTCTTTTTGGAA
Caenorhabditis wallacei genome assembly, chromosome: V.
OZ009932.1:5676941-5676961
GAAAATAAACGATTCATGAATTAGTTTTTT5676941CCTTTTTCTTCCTCTTTTCCAAGTCTAAAAGTGCCTCGTTTACGACATGAG
Homo sapiens chromosome 16 clone RP11-163K4, complete sequence.
AC023823.7:59395-59415
AAAAGATGCTTAAGAATAATCAAGAATGCT59395TGGAAAAGAGGAAGAAAAAGGGAAATTTCTCCTACTGAACCGGTAGTGCTG
Homo sapiens chromosome 16 clone RP11-7O14, complete sequence.
AC109600.2:97349-97369
AAAAGATGCTTAAGAATAATCAAGAATGCT97349TGGAAAAGAGGAAGAAAAAGGGAAATTTCTCCTACTGAACCGGTAGTGCTG
Homo sapiens DNA, chromosome 16, nearly complete genome.
AP023476.1:56169604-56169624
AAAAGATGCTTAAGAATAATCAAGAATGCT56169604TGGAAAAGAGGAAGAAAAAGGGAAATTTCTCCTACTGAACCGGTAGTGCTG
Homo sapiens isolate CHM13 chromosome 16.
CP068262.2:57570834-57570854
AAAAGATGCTTAAGAATAATCAAGAATGCT57570834TGGAAAAGAGGAAGAAAAAGGGAAATTTCTCCTACTGAACCGGTAGTGCTG
Homo sapiens isolate NA24385 chromosome 16.
CP139527.1:51860884-51860904
AAAAGATGCTTAAGAATAATCAAGAATGCT51860884TGGAAAAGAGGAAGAAAAAGGGAAATTTCTCCTACTGAACCGGTAGTGCTG
Homo sapiens isolate NA24385 chromosome 16.
CP139550.1:55079959-55079979
AAAAGATGCTTAAGAATAATCAAGAATGCT55079959TGGAAAAGAGGAAGAAAAAGGGAAATTTCTCCTACTGAACCGGTAGTGCTG
Heterocephalus glaber genome assembly, chromosome: 16.
OX090956.1:53710143-53710163
TTGATAGGCAAAGAGAGAGATTGTGGAAAA53710143TGGAAAAGAGGAAGAAAAAGGGATGAAAAAAGGATGATGGGTAGAGTAATA
Heterocephalus glaber genome assembly, chromosome: 10.
OZ001075.1:63876577-63876597
TTGATAGGCAAAGAGAGAGATTGTGGAAAA63876577TGGAAAAGAGGAAGAAAAAGGGATGAAAAAAGGATGATGGGTAGAGTAATA
Heterocephalus glaber genome assembly, chromosome: 10.
OZ001118.1:64086754-64086774
TTGATAGGCAAAGAGAGAGATTGTGGAAAA64086754TGGAAAAGAGGAAGAAAAAGGGATGAAAAAAGGATGATGGGTAGAGTAATA
Sequence 25622 from Patent EP2052088.
HI163153.1:640-660
AAAAGATGCTTAAGAATAATCAAGAATGCT640TGGAAAAGAGGAAGAAAAAGGGAAATTTCTCCTACTGAACCGGTAGTGCTG
Eukaryotic synthetic construct chromosome 16.
CP034494.1:51746912-51746932
AAAAGATGCTTAAGAATAATCAAGAATGCT51746912TGGAAAAGAGGAAGAAAAAGGGAAATTTCTCCTACTGAACCGGTAGTGCTG
Eukaryotic synthetic construct chromosome 16.
CP034519.1:51746912-51746932
AAAAGATGCTTAAGAATAATCAAGAATGCT51746912TGGAAAAGAGGAAGAAAAAGGGAAATTTCTCCTACTGAACCGGTAGTGCTG
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-16.
CP023128.1:15960445-15960465
GGAAAATTTATTTTAAAGAGTAATACAATT15960445TGGAAAAGAGGAAGAAAAAGGTTTATTGTGGAATACGCCAATCTCAGTTTT
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:144596368-144596388
ACAAAAGAAAGAAAGAAGATTCGGCTAGAG144596368TGGAAAAGAGGAAGAAAAAGGAAAAATGAAAATAGGAGAAGGAGGATTCGG
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 2.
CP124718.1:42304789-42304809
ATCCTCTAGCTGATGAAAGAGAGGCTAATG42304789TGGAAAAGAGGAAGAAAAAGGAGGTTACAAAAACATTAACTCCCATCCCAC
Luzula sylvatica genome assembly, chromosome: 2.
OX326957.1:7773100-7773120
ACTCCCATGCCAGACGAGGAATTGGACGAC7773100TGGAAAAGAGGAAGAAAAAGGGTATATTGCTGAGTATTATGTAATATTTGT
Cladonia squamosa genome assembly, chromosome: 8.
OX392379.1:1623695-1623715
CGGGAATGCACCGGCAGTCCAGAAGCTAGG1623695TGGAAAAGAGGAAGAAAAAGGCTACCTGGGATCAATCTATGATTCAGCAGC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:33971633-33971653
TAATGCTAAACATGAGAATATGAGAAATGA33971633TGGAAAAGAGGAAGAAAAAGGAAACTATATGGCCTAAAATGAATCTAAATG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392560.1:32292359-32292379
AAATGCTAAACATGAGAATATGAGAAATGA32292359TGGAAAAGAGGAAGAAAAAGGAAACTATATGGCCTAAAATGAATCTAAATG
Sambucus nigra genome assembly, chromosome: 10.
OX422216.1:607381107-607381127
GGAGAGAGAAAAGAGAAACACCCAAAGGAA607381107TGGAAAAGAGGAAGAAAAAGGAGGGATCAAAGGCTTTCAAGGGTTCTCCTC
Sambucus nigra genome assembly, chromosome: 15.
OX422221.1:304231647-304231667
AAGAGAGAAAAGAAAGAAGAGAAGAAAGGA304231647TGGAAAAGAGGAAGAAAAAGGGGATTCCGGCCCAAACTCTGCGGGATTCGA
Macrobrachium nipponense isolate FS-2020 chromosome 41.
CP062035.1:7494743-7494763
TTCTTGCTCTTCGGAAAAGCGGAAAAGAGG7494743TGGAAAAGAGGAAGAAAAAGGAAAAGAAGAGAGAAAAGAAGTAGTCGAGAT
Caenorhabditis nigoni strain JU1421 chromosome III.
CP115866.1:11923008-11923028
CATGAATTATAGGAAAGTTGAAGAAAATAT11923008TGGAAAAGAGGAAGAAAAAGGATAAGAAAGAGGTATAATGATTGACGGTGC
Dasysyrphus albostriatus genome assembly, chromosome: 2.
OX276336.1:10973558-10973578
TGCAGTTTTTAAATAATCAATCATCCTCAC10973558TGGAAAAGAGGAAGAAAAAGGGTAGGGTTTTTAACAATATTTTGGAATATA
Conomelus anceps genome assembly, chromosome: 7.
OX418223.1:17872634-17872654
GTCAGTTTTAATATTAGAAGAAGTAGAAAA17872634TGGAAAAGAGGAAGAAAAAGGAGAAAGAGAAAAAGAAGAAAGTAAAACTGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCTTTTTCTTCCTCTTTTCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCTTTTTCTTCCTCTTTTCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.484 | 0.475 | search_plus_done; http://172.18.8.135:50400/match?q=CCTTTTTCTTCCTCTTTTCCA&k=0&no_gap=0&offset=0&limit=50
0.637 | 0.153 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAAAAGAGGAAGAAAAAGG&k=0&no_gap=0&offset=0&limit=32
0.653 | 0.016 | cgi_end;

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