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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 07:19:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Raphanus sativus var. sativus RNA, contig: WG3_22009.
FX665282.1:883-904
GCTTTTACATGCATCCAATTCCAACATTCT883CGAAATTCTCCGCCTCTAGTCAAACTTTAGATCGTCGTCGTCATCATCATCA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:4412844-4412865
GCTTTTACATGCATCCAATCCCAACATTCT4412844CGAAATTCTCCGCCTCTAGTCAACTTTAGATCGTCGTCGTCGTCATCATCAT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:2516174-2516195
GCTTTTACATGCATCCAATTCCAACATTCT2516174CGAAATTCTCCGCCTCTAGTCAAACTTTAGATCGTCGTCGTCATCATCATCA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:2516174-2516195
GCTTTTACATGCATCCAATTCCAACATTCT2516174CGAAATTCTCCGCCTCTAGTCAAACTTTAGATCGTCGTCGTCATCATCATCA
BN15.001N07F011205 BN15 Brassica napus cDNA clone BN15001N07, mRNA sequence.
CD813193.1:54-75
ATGATGATGACGACGACGACGATCTAAAGT54TGACTAGAGGCGGAGAATTTCGAGAATGTTGGGATTGGATGCATGTAAAAGC
BN15.019D16F020121 BN15 Brassica napus cDNA clone BN15019D16, mRNA sequence.
CD813321.1:61-82
ATGATGATGACGACGACGACGATCTAAAGT61TGACTAGAGGCGGAGAATTTCGAGAATGTTGGGATTGGATACATGTAAAAGC
24RDBNH_UP_024_C06_12JAN2004_044 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN731894.1:60-81
ATGATGATGACGACGACGACGATCTAAAGT60TGACTAGAGGCGGAGAATTTCGAGAATGTTGGGATTGGATGCATGTAAAAGC
Brassica oleracea var. viridis mRNA, clone: KALE-107B22, 5' end sequence.
DK496519.1:40-61
ATGGTGATGATGACGACGACGATCTAAAGT40TGACTAGAGGCGGAGAATTTCGAGAATGTTGGAATTGGATGCATGTAAAAGC
DHBN6DCT_UP_002_B06_16FEB2005_046 BRASSICA NAPUS SEEDS BNDH6DCT Brassica napus cDNA 5', mRNA sequence.
EE483362.1:60-81
ATGATGATGACGACGACGACGATCTAAAGT60TGACTAGAGGCGGAGAATTTCGAGAATGTTGGGATTGGATGCATGTAAAAGC
61RDBNCM_UP_073_B12_08NOV2005_094 Brassica napus 61RDBNCM Brassica napus cDNA 5', mRNA sequence.
EE540891.1:54-75
ATGATGATGACGACGACGACGATCTAAAGT54TGACTAGAGGCGGAGAATTTCGAGAATGTTGGGATTGGATGCATGTAAAAGC
24RDBNH_UP_081_H06_10MAR2006_034 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES916099.1:44-65
ATGATGATGACGACGACGACGATCTAAAGT44TGACTAGAGGCGGAGAATTTCGAGAATGTTGGGATTGGATGCATGTAAAAGC
BNYS4DCT_UP_009_G12_20MAR2005_084 Brassica napus BNYS4DCT Brassica napus cDNA 5', mRNA sequence.
EV010506.1:60-81
ATGATGATGACGACGACGACGATCTAAAGT60TGACTAGAGGCGGAGAATTTCGAGAATGTTGGGATTGGATGCATGTAAAAGC
BNSCS3CT_UP_134_A08_09MAY2007_064 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV047262.1:21-42
GGACGACGACGATCTAAAGT21TGACTAGAGGCGGAGAATTTCGAGAATGTTGGGATTGGATGCATGTAAAAGC
BNSCS3CT_UP_202_E04_13MAY2007_024 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV052842.1:54-75
ATGATGATGACGACGACGACGATCTAAAGT54TGACTAGAGGCGGAGAATTTCGAGAATGTTGGGATTGGATGCATGTAAAAGC
BNSCS4CT_UP_136_D01_20MAY2007_009 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV068892.1:57-78
ATGATGATGACGACGACGACGATCTAAAGT57TGACTAGAGGCGGAGAATTTCGAGAATGTTGGGATTGGATGCGTGTAAAAGC
RS2DH84TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY938260.1:45-66
TGATGATGATGACGACGACGGTCTAAAGTT45TGACTAGAGGCGGAGAATTTCGAGAATGTTGGAATTTATGCATGTAAAAGCC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_49497.
FX764147.1:60-81
TTATGATGATGATGACGACGATCTAAAGTT60TGACTAGAGGCGGAGAATTTCGAGAATGTTGGAATTGGATGCATGTAAAACC
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:47679746-47679767
GTGATGATGACGACGACGACGATCTAAAGT47679746TGACTAGAGGCGGAGAATTTCGAGAATGTTGGAATTGGATGCATGTAAAAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGAAATTCTCCGCCTCTAGTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGAAATTCTCCGCCTCTAGTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.122 | 0.114 | search_plus_done; http://172.18.8.135:50400/match?q=CGAAATTCTCCGCCTCTAGTCA&k=0&no_gap=0&offset=0&limit=50
1.433 | 1.311 | search_minus_done; http://172.18.8.135:50400/match?q=TGACTAGAGGCGGAGAATTTCG&k=0&no_gap=0&offset=0&limit=46
1.442 | 0.009 | cgi_end;

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