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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS2DJ10TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY938369.1:277-296
GCGCGCCGTAACGCTTAATCTCAAGTGGAA277CGAACTCGAGGAGCATTTTCACGGGCTCGAGAGGTCTTTGAAGAGACGGT
RS3ER23TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD577556.1:255-274
GCGCGCCGTAACGCTTAATCTCAAGTGGAA255CGAACTCGAGGAGCATTTTCACGGGCTCGAGAGGTCTTTGAAGAGACGGT
Raphanus sativus mRNA, clone: RSCF13P16, 5' end sequence.
FY431366.1:183-202
GCGCGCCGTAACGCTTAATCTCAAGTGGAA183CGAACTCGAGGAGCATTTTCACGGGCTCGAGAGGTCTTTGAAGAGACGGT
Raphanus sativus mRNA, clone: RSCF20B14, 5' end sequence.
FY432914.1:231-250
GCGCGCCGTAACGCTTAATCTCAAGTGGAA231CGAACTCGAGGAGCATTTTCACGGGCTCGAGAGGTCTTTGAAGAGACGGT
Raphanus sativus mRNA, clone: RSCR13H11, 5' end sequence.
FY443865.1:272-291
GCGCGCCGTAACGCTTAATCTCAAGTGGAA272CGAACTCGAGGAGCATTTTCACGGGCTCGAGAGGTCTTTGAAGAGACGGT
Raphanus sativus mRNA, clone: RSCR16C18, 5' end sequence.
FY444699.1:224-243
GCGCGCCGTAACGCTTAATCTCAAGTGGAA224CGAACTCGAGGAGCATTTTCACAGGCTCGAGAGGTCTTTGAAGAGACGGT
Raphanus sativus mRNA, clone: RSCS09F01, 5' end sequence.
FY449054.1:277-296
GCGCGCCGTAACGCTTAATCTCAAGTGGAA277CGAACTCGAGGAGCATTTTCACGGGCTCGAGAGGTCTTTGAAGAGACGGT
Raphanus sativus mRNA, clone: RSCS20I08, 5' end sequence.
FY453066.1:252-271
GCGCGCCGTAACGCTTAATCTCAAGTGGAA252CGAACTCGAGGAGCATTTTCACGGGCTCGAGAGGTCTTTGAAGAGACGGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_9697.
FX782147.1:1687-1706
ACCGTCTCTTCAAAGACCTCTCGAGCCCGT1687GAAAATGCTCCTCGAGTTCGTTCCACTTGAGATTAAGCGTTACGGCGCGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGAACTCGAGGAGCATTTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGAACTCGAGGAGCATTTTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.094 | 1.086 | search_plus_done; http://172.18.8.135:50400/match?q=CGAACTCGAGGAGCATTTTC&k=0&no_gap=0&offset=0&limit=50
1.195 | 0.101 | search_minus_done; http://172.18.8.135:50400/match?q=GAAAATGCTCCTCGAGTTCG&k=0&no_gap=0&offset=0&limit=42
1.195 | 0.001 | cgi_end;

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