GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:27:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene11014_NK1 mRNA sequence.
JV433991.1:2149-2168
GAGAGGAGGCGTCGTTTGGTGGTGGTGTCT2149CGAAGAGGCAGGATACCAAAATATCTCTATACATCTACAATGTTGTCCCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:30778407-30778426
AGGGACAACATTGTAGATGTATAGAGATAT30778407TTTGGTATCCTGCCTCTTCGAGACACCACCACCAAACGACGCCTCCTCTC
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:34487271-34487290
AGGGACAACATTGTAGATGTATAGAGATAT34487271TTTGGTATCCTGCCTCTTCGAGACACCACCACCAAACGACGCCTCCTCTC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A10.
HG996476.1:28007388-28007407
AGGGACAACATTGTAGATGTATAGAGATAT28007388TTTGGTATCCTGCCTCTTCGAGACACCACCACCAAACGACGCCTCCTCTC
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:31468939-31468958
AGGGACAACATTGTAGATGTATAGAGATAT31468939TTTGGTATCCTGCCTCTTCGAGACACCACCACCAAACGACGCCTCCCCTC
Ischnura elegans genome assembly, chromosome: 7.
OV121107.1:37965146-37965165
ATTTTGCAATTACCACGAAAACGGTTTTTC37965146TTTGGTATCCTGCCTCTTCGACATTTTATTTGATACTCTGGATTTTTAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGAAGAGGCAGGATACCAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGAAGAGGCAGGATACCAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.128 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=CGAAGAGGCAGGATACCAAA&k=0&no_gap=0&offset=0&limit=50
0.181 | 0.053 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGGTATCCTGCCTCTTCG&k=0&no_gap=0&offset=0&limit=49
0.185 | 0.004 | cgi_end;

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