GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 22:47:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium pratense DNA, clone:RCG01452.
DE213271.1:100-119
CTTCTCCGTTACCCTTATGGCTTCTTGCGA100CGACGATGACGATTTCTCAATCCTCCGTGACGATAGCCACCACTCTCATC
Trifolium pratense DNA, clone:RCG01838.
DE213581.1:100-119
CTTCTCCGTTACCCTTATGGCTTCTTGCGA100CGACGATGACGATTTCTCAATCCTCCGTGACGATAGCCACCACTCTCATC
Trifolium pratense DNA, clone:RCG03823.
DE215185.1:100-119
CTTCTCCGTTACCCTTATGGCTTCTTGCGA100CGACGATGACGATTTCTCAATCCTCCGTGACGATAGCCACCACTCTCATC
Trifolium subterraneum genome assembly, chromosome: 3.
OX637463.1:36203669-36203688
TTCTCCCGTTACCCTTATGGCTTCTTGCGA36203669CGACGATGACGATTTCTCAATCCTCCGTGACGATAACCACCACTCTCACC
Trifolium dubium genome assembly, chromosome: 7.
OX638068.1:30938964-30938983
CTTCACCGTTAACCTCATGGCTTCTTGCGA30938964CGACGATGACGATTTCTCAATCCTCCGTCACGATAACAACAACCACCACC
Marinomonas sp. CT5 chromosome.
CP025572.1:1891291-1891310
TTTAGCAGCCATACATAGCCACCATTTTCT1891291CGACGATGACGATTTCTCAAGTAATCGAGACCATGACGTGTCGCCTTTAA
Kurthia zopfii strain NCTC404 genome assembly, chromosome: 1.
LR134474.1:66514-66533
TCTTCTCGCATTTCTTCAGAAAGCAATTGT66514CGACGATGACGATTTCTCAAAGCAACTGCAACAGATTTCTTCGCATTCAT
Mytilus edulis genome assembly, chromosome: 3.
OY782958.1:36418195-36418214
GGCATAAAAAATGTTTGTTATCTTGTTAAA36418195CGACGATGACGATTTCTCAATTCTGGAATGACAAGTTTTTCCCCAGCGGT
Trifolium pratense DNA, clone:RCG01746.
DE213504.1:170-189
GATGAGAGTGGTGGCTATCGTCACGGAGGA170TTGAGAAATCGTCATCGTCGTCGCAAGAAGCCATAAGGGTAACGGAGAAG
Trifolium pratense DNA, clone:RCG03903.
DE215248.1:170-189
GATGAGAGTGGTGGCTATCGTCACGGAGGA170TTGAGAAATCGTCATCGTCGTCGCAAGAAGCCATAAGGGTAACGGAGAAG
Trifolium pratense DNA, clone:RCG01028.
DE246683.1:170-189
GATGAGAGTGGTGGCTATCGTCACGGAGGA170TTGAGAAATCGTCATCGTCGTCGCAAGAAGCCATAAGGGTAACGGAGAAG
Trifolium repens isolate ACLI19 chromosome 01_Occ.
CP125836.1:19979256-19979275
GGTGAGAGTGGTGGCTATCGTCACGGAGGA19979256TTGAGAAATCGTCATCGTCGTCGCAAGAAGCCATAAGGGTAACGGAGAAG
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:20912079-20912098
GGTGAGAGTTGTGGCTATCGTCACGGAGGA20912079TTGAGAAATCGTCATCGTCGTCGCAAGAAGCCATAAGGGTAACGGAGAAG
Hemaris fuciformis genome assembly, chromosome: 6.
OU015437.1:4407840-4407859
ATTGTATTTGGACTATGGGTGTAAAAGCCT4407840TTGAGAAATCGTCATCGTCGTCATCAGCCCAAATATATCCCACTGCTGAG
Nephrotoma flavescens genome assembly, chromosome: 3.
OW052222.1:145938559-145938578
ATCCAAATTCAAATGGATCAATTGCAATTT145938559TTGAGAAATCGTCATCGTCGAGAAAGGGATCGATTGTTACGTTTTTAATT
Epinotia bilunana genome assembly, chromosome: 4.
OX346256.1:16688357-16688376
TTCTTAACGGCACCAACGTCTCAAATTATA16688357TTGAGAAATCGTCATCGTCGACATAATGACAATATAACATAAAGGCTCCA
Nephrotoma appendiculata genome assembly, chromosome: 3.
OX371225.1:158985982-158986001
ACCCAAATTCAAATGGATCAATTGTAATTT158985982TTGAGAAATCGTCATCGTCGAGAAAGGGATCGATTGTTACGTTTTTAATT
Rhingia rostrata genome assembly, chromosome: 2.
OX463756.1:14642598-14642617
TCCTGCCAGATTTATTATCGAAAAATTGTT14642598TTGAGAAATCGTCATCGTCGGCTGCCACAAACAATCGCATTTCCGCACCG
Octopus vulgaris genome assembly, chromosome: 18.
OX597831.1:80622716-80622735
GTATCCTCATCATCATTATCTTGTTATTAC80622716TTGAGAAATCGTCATCGTCGCTCGAATTAAATCGTTTTAATCGGCGTTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGACGATGACGATTTCTCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGACGATGACGATTTCTCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.147 | 0.138 | search_plus_done; http://172.18.8.135:50400/match?q=CGACGATGACGATTTCTCAA&k=0&no_gap=0&offset=0&limit=50
0.236 | 0.089 | search_minus_done; http://172.18.8.135:50400/match?q=TTGAGAAATCGTCATCGTCG&k=0&no_gap=0&offset=0&limit=42
0.244 | 0.008 | cgi_end;

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